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Record W195961341 · doi:10.1096/fasebj.20.4.a51

Esculatin‐4‐carboxylic acid ethyl ester: A novel class of marine‐derived anti‐SARS‐coronavirus 3CL protease inhibitors

2006· article· en· W195961341 on OpenAlexafffund
François Jean, Pamela Hamill, Polly Chow, Meera Raj, Richard Yi Tsun Kao, Raymond J. Andersen

Bibliographic record

VenueThe FASEB Journal · 2006
Typearticle
Languageen
FieldComputer Science
TopicComputational Drug Discovery Methods
Canadian institutionsUniversity of British Columbia
FundersCanadian Institutes of Health Research
KeywordsProteaseCoumarinSevere acute respiratory syndrome coronavirus 2 (SARS-CoV-2)CoronavirusProtease inhibitor (pharmacology)Vero cellMetabolitePotencyCoronavirus disease 2019 (COVID-19)BiologyChemistryNatural productPharmacologyVirologyBiochemistryEnzymeVirusIn vitroViral loadMedicine

Abstract

fetched live from OpenAlex

Marine sponges, which produce a remarkable array of secondary metabolites with pharmaceutical potential, are currently under investigation for cancer/pain treatments and anti‐viral therapy. This study describes our discovery of the first small‐molecule protease inhibitor from a marine organism directed at the Severe Acute Respiratory Syndrome (SARS)‐associated coronovirus 3CL protease. By analogy with other coronaviruses, SARS‐CoV encodes a main protease, 3CL, that plays an essential role in the viral life cycle and is currently the prime target for development of new anti‐coronavirus agents. The inhibitory compound was identified as esculatin‐4‐carboxylic acid ethyl ester (MC8: ID 50 = 46 □ M), a novel coumarin derivative extracted from the tropical marine sponge Axinella cf. corrugata , an important model of marine organism. Using a cell‐culture‐based assay of SARS‐CoV infection, we demonstrated that MC8 is an anti‐SARS agent with an EC 50 of 112□ M and a median toxic concentration higher than 800 □M. We are currently synthesizing new analogs of the MC8 coumarin compound and are evaluating their mechanism of inhibition and anti‐SARS‐CoV effects. The results of our work underscore the importance of screening chemically diverse metabolite libraries, obtained from marine sponges, for the discovery of novel protease inhibitors with potent antiviral activities and a good therapeutic index. Supported by CIHR (F. Jean).

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.005

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0020.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.031
GPT teacher head0.287
Teacher spread0.256 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2006
Admission routes2
Has abstractyes

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