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Record W1965046565 · doi:10.1584/jpestics.g06-08

Construction and validation of an insecticide resistance-associated DNA microarray

2007· article· en· W1965046565 on OpenAlexfundno aff
Mao Ding, Qikang Gao, Jianchu Mo, Jiaan Cheng

Bibliographic record

VenueJournal of Pesticide Science · 2007
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicInsect Resistance and Genetics
Canadian institutionsnot available
FundersNational Natural Science Foundation of ChinaUniversity of Guelph
KeywordsBiologyMicroarrayGeneMicroarray analysis techniquesDNA microarrayGeneticsGene expression profilingMolecular biologyGene expression

Abstract

fetched live from OpenAlex

A microarray containing PCR products from a large number of candidate genes in insecticide resistance was constructed. A total of 646 genes putatively involved in insecticide resistance and positive control genes were obtained from six insect species, Apis cerana, Blattella germanica, Spodoptera exigua, Musca domestica, Nilaparrata lugens and Culex pipiens. These genes represent cytochrome P450, ion channel, protective enzyme and other genes, which may play important roles in insecticide resistance. The optical microarray printing concentration (250 ng/μl) was determined using gradient concentration hybridization assay. The DNA microarray was then constructed with all target genes. A PCR probe composed of 18 target genes was prepared to validate the hybridization specificity of the microarray. The positive rate of this validation test was 83.3%. In addition, analysis of differential gene expression between susceptible and multi-resistant (cypermethrin and malathion) strains of M. domestica showed that 17 genes were over-expressed in the resistant strain. The results imply that cytochrome P450 genes, especially the genes of CYP4 and 6 families, play important roles in the resistance of M. domestica to both insecticides. The 17 genes validated by using qRT-PCR were found to have a similar tendency, mostly compared with using a microarray, indicating that this microarray is suitable for studying insecticide resistance.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.001
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.106
Threshold uncertainty score0.266

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.007
GPT teacher head0.261
Teacher spread0.254 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations2
Published2007
Admission routes1
Has abstractyes

Explore more

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