MétaCan
Menu
Back to cohort
Record W1965355928 · doi:10.1139/b08-130

<i>Undifilum</i>, a new genus for endophytic<i>Embellisia oxytropis</i>and parasitic<i>Helminthosporium bornmuelleri</i>on legumes

2009· article· en· W1965355928 on OpenAlexaffvenue
Barry M. Pryor, Rebecca Creamer, R. A. Shoemaker, J. McLain-Romero, Sarah Hambleton

Bibliographic record

VenueBotany · 2009
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicPlant Pathogens and Fungal Diseases
Canadian institutionsAgriculture and Agri-Food Canada
FundersEmory University
KeywordsBiologyBotanyConidiumGenusTaxonSwainsonine

Abstract

fetched live from OpenAlex

Fungal endophytes of Oxytropis kansuensis Bunge from China, previously described as Embellisia oxytropis Q. Wang, Nagao & Kakish, and endophytes of Oxytropis sericea Nutt. and Oxytropis lambertii Pursh from the United States were compared and are reported here as conspecific members of a new genus in the Pleosporaceae, Undifilum, based on morphological and molecular analyses. Morphological comparisons revealed characters that are similar to those of the genus Embellisia including conidia ovate to obclavate to long ellipsoid, straight or slightly to decidedly inequilateral with occasionally one or two cells distinctly swollen, and transepta occasionally thickened, dark, and rigid in comparison with the exterior conidium wall. However, upon germination, conidia produced unique and diagnostic germ tubes that were wavy or undulating in their growth until branching. Moreover, all isolates were found to produce the toxic alkaloid swainsonine. Parsimony analysis of sequences from ITS1–5.8S–ITS2, glyceraldehyde-3-phosphate dehydrogenase gene, and mitochondrial small subunit rDNA data sets revealed that the Oxytropis endophytes formed a clade distinct from other Embellisia species and species in the genera Alternaria , Ulocladium , Nimbya , and Crivellia . A second taxon, Helminthosporium bornmuelleri P. Magnus, was reexamined and found to possess similar morphological features to those of the Oxytropis isolates, but lacked swainsonine production. Sequence analysis placed this second taxon in the same clade with high bootstrap support. The distinct morphology and genetics of these taxa demonstrates that these fungi, both recovered from legumes, represent a new genus, hereinafter described as Undifilum . The two species now placed in this genus are redescribed as Undifilium oxytropis and Undifilium bornmuelleri .

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.004

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.001
Science and technology studies0.0010.000
Scholarly communication0.0010.001
Open science0.0000.001
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.010
GPT teacher head0.238
Teacher spread0.228 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations109
Published2009
Admission routes2
Has abstractyes

Explore more

Same venueBotanySame topicPlant Pathogens and Fungal DiseasesFrench-language works237,207