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Record W1966204875 · doi:10.5539/jas.v3n4p86

Molecular Cloning and Phylogenetic Analysis of Two Plant-Parasitic Nematode 14-3-3 Genes

2011· article· en· W1966204875 on OpenAlexvenueno aff
Dandan Liu, Lijie Chen, Yuxi Duan

Bibliographic record

VenueJournal of Agricultural Science · 2011
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
Topic14-3-3 protein interactions
Canadian institutionsnot available
FundersEarmarked Fund for Modern Agro-industry Technology Research System
KeywordsBiologyNematodeGeneGeneticsPhylogenetic treeOpen reading frameHomology (biology)Meloidogyne incognitaComplementary DNASequence analysisHeteroderaCloning (programming)Amino acidMolecular cloningPeptide sequence

Abstract

fetched live from OpenAlex

Full-length cDNA sequences of highly conserved ubiquitous 14-3-3 proteins were cloned from plant parasitic Heterodera glycines and Meloidogyne incognita using RT-PCR and RACE methods. The two genes were named as Hgly2 and Minc3, respectively. Hgly2 consisted of nucleotide sequence of 1027bp and Minc3 of 1525 bp. And the open reading frames (ORF) encode peptide of 251 and 261 amino acids separately. Homology analysis showed that the deduced amino acid sequences shared the high homology with different nematode species. The phylogenetic analysis indicated that the proteins from plant parasitic nematode were more similar to insect proteins than plant and other animal proteins reported by previous research.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.275
Threshold uncertainty score0.262

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.013
GPT teacher head0.265
Teacher spread0.252 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations6
Published2011
Admission routes1
Has abstractyes

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