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Record W1966261238 · doi:10.3109/03009734.2014.898718

Antibiotic resistance and the golden age of microbiology

2014· article· en· W1966261238 on OpenAlexaff
Julian Davies

Bibliographic record

VenueUpsala Journal of Medical Sciences · 2014
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicRNA and protein synthesis mechanisms
Canadian institutionsUniversity of British Columbia
Fundersnot available
KeywordsAntibioticsRibosomeAntibiotic resistanceTetracyclineStreptomycinMicrobiologyPenicillinTranslation (biology)Mode of actionAntimicrobialMutantComputational biologyGeneticsBiologyMedicineGeneBiochemistryRNAMessenger RNA

Abstract

fetched live from OpenAlex

The ability of micro-organisms to develop resistance to the action of inhibitors has been known since the discovery of antimicrobial agents.The first reports were concerned with agents such as Salvarsan and Prontosil in the early 1900s; the phenomenon of 'fastness' to these agents was observed frequently during treatment with the drugs.Following the development of the sulfonamides in the 1940s and discovery of the 'true' antibiotics, those produced by fermentation such as penicillin, streptomycin, tetracycline, etc. in the 1950s, the study of antibiotic resistance and its mechanisms paralleled those concerned with mode of action.In the first place, the genetic characterization of a specific resistance mechanism was a critical step in defining antibiotic mode of action.The identification of a binding site or the accumulation of a biosynthetic intermediate provided important clues to the ways by which the antibiotics acted on microbes.To cite a specific case, mutants resistant to the aminoglycosides were early identified as alterations in ribosome structure, and these provided critical information about the structure of ribosomes and their functions in the translation process.The identification of these key components led to the characterization of antibiotic target sites within the ribosome structure: these have been confirmed by X-ray crystallographic studies (1).Similar analyses have revealed detailed molecular information on the targets for most classes of antibiotics.Interestingly, one phenotype that has never been adequately described is that of mutants that are dependent on the presence of antibiotics (such as streptomycin) for ribosome function in translation.Antibiotic resistance (AR) has become a field of research in its own right, and deciphering the widespread biochemical mechanisms involved have

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.005
metaresearch head score (Gemma)0.006
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.008
Threshold uncertainty score0.027

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0050.006
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0010.001
Science and technology studies0.0020.016
Scholarly communication0.0050.009
Open science0.0010.004
Research integrity0.0050.007
Insufficient payload (model declined to judge)0.0080.003

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.011
GPT teacher head0.256
Teacher spread0.244 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations12
Published2014
Admission routes1
Has abstractyes

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