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Record W1969592309 · doi:10.1158/1055-9965.epi-07-0129

<i>AURKA</i>F31I Polymorphism and Breast Cancer Risk in<i>BRCA1</i>and<i>BRCA2</i>Mutation Carriers: A Consortium of Investigators of Modifiers of BRCA1/2 Study

2007· article· en· W1969592309 on OpenAlexaff
Fergus J. Couch, Olga M. Sinilnikova, Robert A. Vierkant, V. Shane Pankratz, Zachary S. Fredericksen, Dominique Stoppa‐Lyonnet, Isabelle Coupier, David J. Hughes, Agnès Hardouin, Pascaline Berthet, Susan Peock, Margaret Cook, Caroline Baynes, Shirley Hodgson, Patrick J. Morrison, Mary Porteous, Anna Jakubowska, Jan Lubiński, Jacek Gronwald, Amanda B. Spurdle, Rita K. Schmutzler, Beatrix Versmold, Christoph Engel, Alfons Meindl, Christian Sutter, Jürgen Horst, Dieter Schaefer, Kenneth Offit, Tomas Kirchhoff, Irene L. Andrulis, Eduard Ilyushik, Gordon Glendon, Peter Devilee, Maaike P.G. Vreeswijk, Hans F. A. Vasen, Åke Borg, Katja Backenhorn, Jeffery P. Struewing, Mark H. Greene, Susan L. Neuhausen, Timothy R. Rebbeck, Katherine L. Nathanson, Susan M. Domchek, Theresa Wagner, Judy E. Garber, Csilla I. Szabo, Michal Zikán, Lenka Foretová, Janet E. Olson, Thomas A. Sellers, Noralane M. Lindor, Heli Nevanlinna, Johanna Tommiska, Kristiina Aittomäki, Ute Hamann, Muhammad Usman Rashid, Diana Torres, Jacques Simard, Francine Durocher, Frédéric Guénard, Henry T. Lynch, Claudine Isaacs, Jeffrey N. Weitzel, Olufunmilayo I. Olopade, Steven A. Narod, Mary B. Daly, Andrew K. Godwin, Gail E. Tomlinson, Douglas F. Easton, Georgia Chenevix‐Trench, Antonis C. Antoniou

Bibliographic record

VenueCancer Epidemiology Biomarkers & Prevention · 2007
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicBRCA gene mutations in cancer
Canadian institutionsCoalition for Research in Women's HealthUniversité LavalCancer Care OntarioCentre hospitalier universitaire de QuébecLunenfeld-Tanenbaum Research Institute
FundersNational Center for Research ResourcesMedical Research CouncilNational Health and Medical Research CouncilLeids Universitair Medisch CentrumNational Breast Cancer FoundationNational Cancer InstituteCancer Research UK
KeywordsBreast cancerOncologyHazard ratioMedicineInternal medicineCancerBRCA mutationAlleleCancer researchConfidence intervalBiologyGeneticsGene

Abstract

fetched live from OpenAlex

The AURKA oncogene is associated with abnormal chromosome segregation and aneuploidy and predisposition to cancer. Amplification of AURKA has been detected at higher frequency in tumors from BRCA1 and BRCA2 mutation carriers than in sporadic breast tumors, suggesting that overexpression of AURKA and inactivation of BRCA1 and BRCA2 cooperate during tumor development and progression. The F31I polymorphism in AURKA has been associated with breast cancer risk in the homozygous state in prior studies. We evaluated whether the AURKA F31I polymorphism modifies breast cancer risk in BRCA1 and BRCA2 mutation carriers from the Consortium of Investigators of Modifiers of BRCA1/2. Consortium of Investigators of Modifiers of BRCA1/2 was established to provide sufficient statistical power through increased numbers of mutation carriers to identify polymorphisms that act as modifiers of cancer risk and can refine breast cancer risk estimates in BRCA1 and BRCA2 mutation carriers. A total of 4,935 BRCA1 and 2,241 BRCA2 mutation carriers and 11 individuals carrying both BRCA1 and BRCA2 mutations was genotyped for F31I. Overall, homozygosity for the 31I allele was not significantly associated with breast cancer risk in BRCA1 and BRCA2 carriers combined [hazard ratio (HR), 0.91; 95% confidence interval (95% CI), 0.77-1.06]. Similarly, no significant association was seen in BRCA1 (HR, 0.90; 95% CI, 0.75-1.08) or BRCA2 carriers (HR, 0.93; 95% CI, 0.67-1.29) or when assessing the modifying effects of either bilateral prophylactic oophorectomy or menopausal status of BRCA1 and BRCA2 carriers. In summary, the F31I polymorphism in AURKA is not associated with a modified risk of breast cancer in BRCA1 and BRCA2 carriers.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.003
metaresearch head score (Gemma)0.004
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.011
Threshold uncertainty score0.021

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0030.004
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0010.001
Science and technology studies0.0010.000
Scholarly communication0.0010.000
Open science0.0000.001
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.023
GPT teacher head0.330
Teacher spread0.307 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations36
Published2007
Admission routes1
Has abstractyes

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