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Cold induced expression of plant defensin and lipid transfer protein transcripts in winter wheat

2003· article· en· W1970623362 on OpenAlexaff
D. A. Gaudet, André Laroche, Michele Frick, René Huel, B. Puchalski

Bibliographic record

VenuePhysiologia Plantarum · 2003
Typearticle
Languageen
FieldImmunology and Microbiology
TopicAntimicrobial Peptides and Activities
Canadian institutionsAgriculture and Agri-Food Canada
Fundersnot available
KeywordsBiologyPlant lipid transfer proteinsComplementary DNASuppression subtractive hybridizationcDNA libraryDefensinMolecular biologySubfamilyGene expressionBotanyGeneGenetics

Abstract

fetched live from OpenAlex

In winter wheat, low temperature hardening induces a non‐specific resistance to snow moulds and other fungi. In a suppressive subtractive hybridization cDNA library between winter wheat unhardened and hardened at 2°C, 17% of 186 sequenced cDNA clones were homologous to the small plant defence related proteins, γ‐thionin, γ‐purothionin or non‐specific lipid transfer proteins (LTPs), based on their nucleotide sequences or deduced from amino acid sequences. Several partial‐ and full‐length cDNA clones homologous to two defensin proteins (γ‐thionin, subfamily B‐2, γ‐purothionin, subfamily I), and non‐specific LTPs were isolated. Regulation of defensin transcripts was clearly different from that of the LTPs under controlled environments in the field. The γ‐thionin and γ‐purothionin transcripts were not expressed in unhardened plants grown at 20°C, strongly upregulated after 1–3 days hardening at 2°C, remained upregulated for 28 days hardening, and disappeared following 1 day of exposure to dehardening conditions at 20°C. The LTPs transcripts were constitutively expressed in plants growing at 20°C, gradually increased to maximum levels following 14–28 days at hardening, and remained upregulated following 1 and 7 days dehardening. In the field, the γ‐thionin and γ‐purothionin transcripts rapidly increased to maximum levels by mid‐November and decreased gradually during the winter until mid‐March LTP transcripts were highly expressed in the early autumn, further increased during December–January, then decreased during late winter and early spring. Differences in the pattern and level of expression of these transcripts were evident among cultivars; γ‐thionin expression was associated with freezing resistance among the genotypes tested under both controlled environment and field conditions.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.005
Threshold uncertainty score0.621

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.016
GPT teacher head0.201
Teacher spread0.185 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations71
Published2003
Admission routes1
Has abstractyes

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