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Record W1970973118 · doi:10.1101/sqb.2012.77.014886

A Tale of Two Systems: Peptide Ligand-Receptor Pairs in Plant Development

2012· review· en· W1970973118 on OpenAlexfundno aff
Jin‐Suk Lee, Keiko U. Torii

Bibliographic record

VenueCold Spring Harbor Symposia on Quantitative Biology · 2012
Typereview
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicPlant Reproductive Biology
Canadian institutionsnot available
FundersNatural Sciences and Engineering Research Council of CanadaGordon and Betty Moore FoundationPrecursory Research for Embryonic Science and TechnologyHoward Hughes Medical InstituteNational Science Foundation
KeywordsReceptorSignal transductionPeptideBiologyCell biologyLigand (biochemistry)Cell surface receptorIntracellularKinaseBiochemistry

Abstract

fetched live from OpenAlex

Plants have developed intercellular signaling systems that use secreted peptides and plasma membrane-localized receptor-like kinases (RLKs). Although there has been little experimental evidence linking specific peptide ligands to receptors, recent studies of several ligand-receptor pairs have revealed their increasingly important roles in cell-cell communications during plant development. In this review, we focus on two specific families of plant peptides: the CLAVATA3/ENDOSPERM SURROUNDING REGION (CLE) peptide family and the EPIDERMAL PATTERING FACTOR (EPF) family, along with their corresponding RLKs. We discuss how these two unrelated peptide-mediated signaling systems control plant cell fate and development using similar receptor kinases as well as the mechanisms for how these peptide ligand-receptor pairs precisely regulate various distinct aspects of plant development at the level of ligand-receptor recognition and signal transduction.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: none
GenreCandidate signal: Review · Consensus signal: Review
Teacher disagreement score0.003
Threshold uncertainty score0.011

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.000
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0010.002
Science and technology studies0.0000.001
Scholarly communication0.0010.003
Open science0.0010.001
Research integrity0.0020.002
Insufficient payload (model declined to judge)0.0030.003

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.047
GPT teacher head0.315
Teacher spread0.268 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreReview

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations16
Published2012
Admission routes1
Has abstractyes

Explore more

Same venueCold Spring Harbor Symposia on Quantitative BiologySame topicPlant Reproductive BiologyFrench-language works237,207