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Molecular cloning and characterization of a type III glutathione <i>S</i>‐transferase from cell suspension cultures of opium poppy treated with a fungal elicitor

2000· article· en· W1976594740 on OpenAlexafffund
Min Yu, Peter J. Facchini

Bibliographic record

VenuePhysiologia Plantarum · 2000
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGlutathione Transferases and Polymorphisms
Canadian institutionsUniversity of Calgary
FundersNatural Sciences and Engineering Research Council of Canada
KeywordsPapaverComplementary DNABiochemistrycDNA libraryBiologyGlutathione S-transferaseMolecular biologyMolecular cloningOpium PoppySouthern blotCatharanthus roseusPapaveraceaeGlutathioneGeneEnzymeAlkaloidBotany

Abstract

fetched live from OpenAlex

Glutathione S ‐transferases (GSTs) catalyze the conjugation of electrophilic compounds to glutathione (GSH), and are involved in the detoxification of xenobiotics in plants. However, little is known about the endogenous substrates of plant GSTs, or their role in normal cellular processes. A cDNA library was constructed with poly(A) + RNA isolated from cell suspension cultures of opium poppy ( Papaver somniferum L.) treated with a fungal elicitor. A putative type III GST fragment was amplified by PCR from the cDNA library using degenerate primers designed from conserved domains found in several plant GSTs. The cDNA library was screened with the PCR product and 3 homologous clones were isolated. Deduced amino acid sequences from these clones displayed extensive homology to other plant type III GSTs, especially within the N‐terminal domain. One full‐length cDNA, designated pGST2, was expressed in Escherichia coli , and the recombinant enzyme exhibited strong GST activity in bacterial protein extracts, using 1‐chloro‐2,4‐dinitrobenzene as the substrate. Recombinant GST2 activity was inhibited by p ‐coumaroyl‐ and feruloyl‐CoA esters, and p ‐coumaric‐ and ferulic‐acid amides of tyramine, but not by free hydroxycinnamic acids or aromatic amines. Although type III GSTs in opium poppy appear to bind select endogenous phenolics, the in vitro conjugation of GSH to these compounds was not detected. Genomic DNA gel blot‐hybridization analysis confirmed the existence of a small family of type III GST genes in opium poppy. RNA gel blot‐hybridization analysis showed that type III GST transcripts were most abundant in the roots of mature opium poppy plants, and were induced in developing seedlings and in cell suspension cultures treated with a fungal elicitor. Relative transcript levels were generally consistent with the levels of total GST enzyme activity in each tissue.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.012
Threshold uncertainty score0.619

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.004
GPT teacher head0.197
Teacher spread0.193 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations20
Published2000
Admission routes2
Has abstractyes

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