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Genomic instability in human cancer: Molecular insights and opportunities for therapeutic attack and prevention through diet and nutrition

2015· review· en· W1981587077 on OpenAlexafffund
Lynnette R. Ferguson, Helen Chen, Andrew Collins, Marisa Connell, Giovanna Damia, Santanu Dasgupta, Meenakshi Malhotra, Alan K. Meeker, Amedeo Amedei, Amr Amin, S. M. Ashraf, Katia Aquilano, Asfar S. Azmi, Dipita Bhakta-Guha, Alan Bilsland, Chandra S. Boosani, Sophie Chen, Maria Rosa Ciriolo, Hiromasa Fujii, Gunjan Guha, Dorota Halicka, William G. Helferich, W. Nicol Keith, Sulma I. Mohammed, Elena Niccolai, Xujuan Yang, Kanya Honoki, Virginia R. Parslow, Satya Prakash, Sarallah Rezazadeh, Rodney E. Shackelford, David Sidransky, Phuoc T. Tran, Eddy S. Yang

Bibliographic record

VenueSeminars in Cancer Biology · 2015
Typereview
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicDNA Repair Mechanisms
Canadian institutionsChild and Family Research InstituteUniversity of British Columbia
FundersNational Institute of Dental and Craniofacial ResearchNational Cancer InstituteNational Center for Complementary and Integrative HealthNational Institute on AgingCanadian Institutes of Health ResearchUniversità degli Studi di FirenzeNational Institutes of HealthTerry Fox FoundationUnited Arab Emirates UniversityMinistry of Education, Culture, Sports, Science and TechnologyUniversitetet i OsloMinistero dell’Istruzione, dell’Università e della RicercaBreast Cancer Research TrustAvon Foundation for WomenCancer Research UKUniversity of RochesterCenter for Hierarchical Manufacturing, National Science FoundationChild and Family Research InstituteU.S. Public Health ServiceU.S. Department of DefenseAssociazione Italiana per la Ricerca sul CancroEli Lilly and CompanyBristol-Myers SquibbNational Institute of Diabetes and Digestive and Kidney DiseasesDepartment of Biology, Indiana State UniversityVerein fur KrebsforschungUniting Against Lung CancerElsa U. Pardee FoundationUniversity of GlasgowSusan G. Komen for the Cure
KeywordsGenome instabilityBiologyDNA damageChromosome instabilityCancerDNA repairEpigeneticsTelomereMicrosatellite instabilityCentrosomeCancer researchGeneticsComputational biologyBioinformaticsDNAGeneCell cycleChromosome

Abstract

fetched live from OpenAlex

Genomic instability can initiate cancer, augment progression, and influence the overall prognosis of the affected patient. Genomic instability arises from many different pathways, such as telomere damage, centrosome amplification, epigenetic modifications, and DNA damage from endogenous and exogenous sources, and can be perpetuating, or limiting, through the induction of mutations or aneuploidy, both enabling and catastrophic. Many cancer treatments induce DNA damage to impair cell division on a global scale but it is accepted that personalized treatments, those that are tailored to the particular patient and type of cancer, must also be developed. In this review, we detail the mechanisms from which genomic instability arises and can lead to cancer, as well as treatments and measures that prevent genomic instability or take advantage of the cellular defects caused by genomic instability. In particular, we identify and discuss five priority targets against genomic instability: (1) prevention of DNA damage; (2) enhancement of DNA repair; (3) targeting deficient DNA repair; (4) impairing centrosome clustering; and, (5) inhibition of telomerase activity. Moreover, we highlight vitamin D and B, selenium, carotenoids, PARP inhibitors, resveratrol, and isothiocyanates as priority approaches against genomic instability. The prioritized target sites and approaches were cross validated to identify potential synergistic effects on a number of important areas of cancer biology.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: none
GenreCandidate signal: Review · Consensus signal: Review
Teacher disagreement score0.003
Threshold uncertainty score0.009

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0020.001
Science and technology studies0.0000.001
Scholarly communication0.0010.001
Open science0.0010.001
Research integrity0.0010.002
Insufficient payload (model declined to judge)0.0030.002

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.116
GPT teacher head0.402
Teacher spread0.285 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreReview

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations333
Published2015
Admission routes2
Has abstractyes

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