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Phytoplasma associated with a witches’ broom disease of <i>Gleditsia sinensis</i> (Fabaceae) newly reported in China

2009· article· en· W1983996961 on OpenAlexaff
H. Min, Z. N. Li, Yu-Da Wu, Shiu-Ying Hu, C. P. Zhang, Kuan Wu

Bibliographic record

VenuePlant Pathology · 2009
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicPhytoplasmas and Hemiptera pathogens
Canadian institutionsScience North
FundersHigher Education Discipline Innovation ProjectNational Science Foundation
KeywordsPhytoplasmaBiologyHaeIIIRestriction fragment length polymorphismBroom16S ribosomal RNABotanyPolymerase chain reactionGeneticsGene

Abstract

fetched live from OpenAlex

Gleditsia sinensis (Chinese honeylocust) is widely distributed in China due to its important use in traditional Chinese medicine. In August of 2008, G. sinensis trees in Shanxi Province, exhibited symptoms of witches’ broom, stunting, smaller leaves, and yellowing gradually becoming browning: a phytoplasma infection was suspected. Total DNA was extracted from 0·5 g of phloem tissue from leaf midribs and stems of eight plants with, and eight plants without symptoms (Angelini et al., 2001). DNA was analyzed for phytoplasma by a nested PCR assay using phytoplasma universal 16S rDNA primers R16mF1/R16mR1 and R16F2n/R16R2 (Gundersen & Lee, 1996). PCR products of 1·4 and 1·2 kb, respectively, were produced from all plants with symptoms, but not from symptomless plants. Restriction fragment length polymorphism (RFLP) analyses of R16F2n/R16R2 amplicons with AluI, HhaI, TaqI, EcoRI, HaeIII, RsaI and HpaII endonucleases, indicated that all plants with symptoms contained a phytoplasma strain of group 16SrV (‘Candidatus Phytoplasma ulmi’), subgroup B (16SrV-B). The G. sinensis phytoplasma 16S rDNA sequence (GenBank Accession No. FJ457095) scored the highest identity (99%) with those of group 16SrV, thereby confirming strain identity based on RFLP. Phytoplasmas of 16SrV have previously reported on jujube (Zhu et al., 1997) and paper mulberry (Liu et al., 2004) causing witches’ broom in China. This is the first report of a ‘Candidatus Phytoplasma ulmi’-related strain affecting G. sinensis in China.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.267
Threshold uncertainty score0.357

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.012
GPT teacher head0.191
Teacher spread0.179 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations7
Published2009
Admission routes1
Has abstractyes

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