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Record W1986322731 · doi:10.1080/07060661.2012.681396

Taxonomic identification of rhizospheric actinobacteria isolated from Algerian semi-arid soil exhibiting antagonistic activities against plant fungal pathogens

2012· article· en· W1986322731 on OpenAlexaffvenue
Lamia Aouar, Sylvain Lerat, Ammar Ouffroukh, Abderrahmane Boulahrouf, Carole Beaulieu

Bibliographic record

VenueCanadian Journal of Plant Pathology · 2012
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicPlant-Microbe Interactions and Immunity
Canadian institutionsUniversité de Sherbrooke
FundersInstitut National de la Recherche Agronomique
KeywordsBiologyActinobacteriaBipolarisBotanyRhizosphereFusarium oxysporumStreptomycesVerticillium dahliaeMicrobacteriumFusariumMicrobiologyStreptomyces griseusAlternariaAntagonism16S ribosomal RNABacteria

Abstract

fetched live from OpenAlex

The rhizosphere is a rich source of actinobacteria and some members of this bacterial group present strong abilities in the biocontrol of plant diseases. In the present study, 72 strains of actinobacteria were isolated from different rhizospheric semi-arid soils collected in Algeria. Their in vitro antagonistic activity was assayed toward the following plant pathogenic fungi: Verticillium dahliae, Fusarium culmorum, Drechslera teres, Microdochium nivale, Bipolaris sorokiniana, Botrytis fabae and Fusarium oxysporum. All isolates showed chitinolytic activity and six isolates (Lac1, Lac3, Vic8, Pin10, Pru14 and Pru16), which inhibited the growth of five or more of the fungi tested, were selected for further study. According to morphological and physiological characteristics, as well as phylogenetic analysis of 16S rRNA gene sequences, isolates Lac1, Lac3, Pru14 and Pru16 were identified as members of the genus Streptomyces, namely S. griseus, S. rochei, S. anulatus and S. champavatii, respectively. Two isolates, Vic8 and Pin10, were associated with the Nocardiopsis genus and identified as N. dassonvillei subsp. dassonvillei and N. alba, respectively. While antagonism of Streptomyces has been demonstrated against a wide variety of plant pathogens, only a few studies have reported production of antifungal products by the genus Nocardiopsis.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.003
Threshold uncertainty score0.005

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.016
GPT teacher head0.190
Teacher spread0.174 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations29
Published2012
Admission routes2
Has abstractyes

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