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Record W1986777357 · doi:10.1094/pd-89-0910a

Absence of <i>Potato spindle tuber viroid</i> within the Canadian Potato Industry

2005· article· en· W1986777357 on OpenAlexaffabout
S. H. De Boer, T.-L. DeHaan

Bibliographic record

VenuePlant Disease · 2005
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicPlant Virus Research Studies
Canadian institutionsCanadian Food Inspection Agency
Fundersnot available
KeywordsPotato spindle tuber viroidBiologyViroidPotato virus YHorticulturePlant virusBotanyAgronomyVirologyVirus

Abstract

fetched live from OpenAlex

Potato spindle tuber viroid (PSTVd) causes a serious disease of potato, affecting yield and tuber quality. To control the disease, the Canadian seed certification program maintains a zero tolerance for the disease and a requirement that all nuclear stock, the micropropagated plantlets from which each lot of seed potatoes is initiated, is tested using reverse polyacrylamide gel electrophoresis (rPAGE) to ensure freedom from PSTVd. Moreover, seed potato fields are visually inspected during two or more annual field inspections for the presence of PSTVd and viruses. Symptoms of PSTVd have not been observed during field inspections for at least the last 25 years. Prior to 1989, seed potato stocks in the provinces of Prince Edward Island and New Brunswick were tested using rPAGE and nucleic acid dot blot hybridization for the presence of the viroid, and no infections were found (1). Similar surveys for PSTVd in Canada's western provinces of British Columbia, Alberta, and Saskatchewan also failed to detect the viroid (2). During 2000-2004, the PSTVd survey was extended to the provinces of Manitoba, Ontario, Quebec, Nova Scotia, and Newfoundland in which 211, 188, 95, 6, and 10 samples, respectively, were collected. Each sample consisted of 400 randomly selected leaves from selected potato fields representing seed lots registered in one of the four Elite seed classes or in the Foundation and Certified classes, except for a small number of samples (11%) that were from commercial nonseed fields. Leaves were tested using the dot blot procedure in composites of 50 leaves as described (2). Approximately 10% of the samples were retested using rPAGE followed by northern blotting to confirm dot blot results. All dot blot and rPAGE/northern blot results were negative for PSTVd. The cumulative results of the PSTVd surveys in all 10 Canadian provinces and the absence of the disease in the field as determined by annual visual inspection meets the International Standards of Phytosanitary Measures for the Requirements for the Establishment of Pest Free Areas (3). Hence, Canada declares that PSTVd is absent within its potato industry. A similar declaration was made by the United States recently on the basis of similar field inspection and survey data (4). References: (1) D. Coates-Milne. FAO Plant Prot. Bull. 37:130, 1989. (2) S. H. De Boer et al. Can. J. Plant Pathol. 24:372, 2002. (3) FAO. ISPM Pub. No. 4, 1996. (4) M. Sun et al. Am. J. Potato Res. 81:227, 2004.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.468
Threshold uncertainty score0.935

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.029
GPT teacher head0.241
Teacher spread0.212 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations13
Published2005
Admission routes2
Has abstractyes

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