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Record W1994297595 · doi:10.1016/j.ymthe.2006.08.632

559. A Pseudo-Exon Derived from an Intronic Insertion Is Responsible for Duchenne-Like Muscular Dystrophy in the Welsh Corgi Dog

2006· article· en· W1994297595 on OpenAlexaboutno aff
B. F. Smith

Bibliographic record

VenueMolecular Therapy · 2006
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicMuscle Physiology and Disorders
Canadian institutionsnot available
Fundersnot available
KeywordsDystrophinDuchenne muscular dystrophyMuscular dystrophyMuscle contractureExonNonsense mutationPopulationBiologyMedicinePathologyMutationInternal medicineGeneticsEndocrinologyMissense mutationAnatomyGene

Abstract

fetched live from OpenAlex

Duchenne Muscular Dystrophy (DMD) is the most common X- linked inherited disease, with an incidence of 1 in 3500 male births. This disease is relentlessly progressive and usually fatal by early adulthood. A wide range of mutations in the dystrophin gene have been characterized for DMD, as well as the less severe form, Becker's Muscular Dystrophy. DMD presents gene therapy challenges due to the size of the gene and resulting cDNA and the wide variety and complexity of the mutations involved. Animal models for DMD have been described in the mouse, cat and dog. The disease in mice and cats is significantly less severe than that seen in humans, while the canine disease, characterized by muscle hypertrophy, followedby muscle loss, fibrosis and death, closely mimics disease progression in affected humans. As is expected from the frequency of mutation in the human population, DMD has been recognized in several breeds of dogs including the Golden Retriever, German Short-Haired Pointer, Rottweiler, Labrador Retriever, West Highland White and Welsh Corgi. Where the mutation has been determined, each breed has demonstrated a new mutation. Here we report the identification of the mutation responsible for DMD in the Welsh Corgi. Affected dogs can be recognized at, or shortly after, birth by increased serum creatine kinase levels. These dogs show progressive muscle atrophy and fibrosis, stunted growth, contractures and consequent debilitation. However, several of the affected males have lived to sexual maturity. Muscle biopsies from affected Corgis show that most fibers remain unstained for dystrophin, while rare fibers show dystrophin staining using a variety of antibodies. Sequence analysis of the cDNA indicates a 166 base insertion between exons 13 and 14, based on the human exon structure. The inserted sequence shows a high degree of sequence similarity to a canine LINE-1 element. Sequence analysis of intron 13, which is approximately 25kb, indicates that there is an insertion in the intron. The insertion is immediately downstream of an AG dinucleotide pair and contains the 166 bases seen in the cDNA followed by a GT dinucleotide pair and additional inserted sequence. Thus the insertion utilizes a putative intronic 3’ splice acceptor site and a 5’ splice donor to form a novel exon, which is spliced into the mature mRNA. An in-frame stop codon in this novel exon results in a truncated dystrophin protein, which is non-functional. Staining of occasional fibers with antibodies to epitopes located downstream of this insertion indicates that this exon may be skipped or that alternative splicing and/or promoter use may produce a product. This large animal model, with its defined mutation, will be useful in a variety of ways, including the use of gene repair approaches to skip the inserted exon, studies of spicing mechanisms in dystrophin, and studies of other gene therapy approaches.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.130
Threshold uncertainty score0.833

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.008
GPT teacher head0.257
Teacher spread0.249 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2006
Admission routes1
Has abstractyes

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