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Record W1994614361 · doi:10.2135/cropsci2009.06.0334

Association Mapping of Malting Quality Data from Western Canadian Two‐row Barley Cooperative Trials

2010· article· en· W1994614361 on OpenAlexafffundabout
Aaron D. Beattie, Michael J. Edney, G. J. Scoles, B. G. Rossnagel

Bibliographic record

VenueCrop Science · 2010
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicWheat and Barley Genetics and Pathology
Canadian institutionsUniversity of Saskatchewan
FundersWestern Grains Research FoundationU.S. Department of Agriculture
KeywordsBiologyHordeum vulgareTraitAssociation mappingGeneticsSelection (genetic algorithm)PopulationExpressed sequence tagAlleleQuantitative trait locusGeneBiotechnologyComputational biologyBotanyGenotypePoaceaeSingle-nucleotide polymorphismGene expression

Abstract

fetched live from OpenAlex

ABSTRACT Re‐examining historical datasets is a proposed use for association mapping (AM) and is particularly valuable when the data describes time‐consuming and/or expensive to measure traits. A collection of 91 elite two‐row malting barley ( Hordeum vulgare L.) lines entered in the western Canadian Cooperative Two‐Row Barley Trials over a 13‐ yr period were analyzed by AM to identify markers associated with seven malting quality traits. A linear mixed‐model incorporating population structure and familial relatedness identified 27 diversity array technology (DArT) markers associated with malting quality. These markers will assist selection of parents with complementary allele combinations for future crosses and help identify progeny with the desired alleles. Putative candidate expressed sequence tags (ESTs) responsible for marker‐trait associations were identified for 19 of the 27 DArT markers and include genes important for seed storage protein accumulation, gibberellin‐mediated gene expression, seed storage mobilization, and dormancy. Efforts to identify novel variability in these genes may present opportunities to improve malting quality.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.005
metaresearch head score (Gemma)0.002
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.833
Threshold uncertainty score0.884

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0050.002
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0010.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.150
GPT teacher head0.348
Teacher spread0.198 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations35
Published2010
Admission routes3
Has abstractyes

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