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Record W1995183079 · doi:10.1074/jbc.m305952200

Constitutive Activation of the Angiotensin II Type 1 Receptor Alters the Spatial Proximity of Transmembrane 7 to the Ligand-binding Pocket

2003· article· en· W1995183079 on OpenAlexaff
Antony A. Boucard, Marise Roy, Marie-Ève Beaulieu, Pierre Lavigne, Emanuel Escher, Gaétan Guillemette, Richard Leduc

Bibliographic record

VenueJournal of Biological Chemistry · 2003
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicReceptor Mechanisms and Signaling
Canadian institutionsUniversité de Sherbrooke
Fundersnot available
KeywordsReceptorLigand (biochemistry)Transmembrane domainTransmembrane proteinBiophysicsAgonistBinding siteG protein-coupled receptorChemistryMutantCysteineAngiotensin IIStereochemistryBiochemistryBiologyGeneEnzyme

Abstract

fetched live from OpenAlex

Activation of G protein-coupled receptors by agonists involves significant movement of transmembrane domains (TM) following binding of agonist. The underlying structural mechanism by which receptor activation takes place is largely unknown but can be inferred by detecting variability within the environment of the ligand-binding pocket, which constitutes a water-accessible crevice surrounded by the seven TM helices. Using the substituted cysteine accessibility method, we initially identified those residues within the seventh transmembrane domain (TM7) of wild type angiotensin II type 1 (AT1) receptor that contribute to forming the binding site pocket. We have substituted successively TM7 residues ranging from Ile276 to Tyr302 to cysteine. Treatment of A277C, V280C, T282C, A283C, I286C, A291C, and F301C mutant receptors the which that residues within the water-accessible binding of the of TM7 a mutant of the that TM7 of the receptor a of that from the binding of TM7 of activation of the receptor structural Activation of G protein-coupled receptors by agonists involves significant movement of transmembrane domains (TM) following binding of agonist. The underlying structural mechanism by which receptor activation takes place is largely unknown but can be inferred by detecting variability within the environment of the ligand-binding pocket, which constitutes a water-accessible crevice surrounded by the seven TM helices. Using the substituted cysteine accessibility method, we initially identified those residues within the seventh transmembrane domain (TM7) of wild type angiotensin II type 1 (AT1) receptor that contribute to forming the binding site pocket. We have substituted successively TM7 residues ranging from Ile276 to Tyr302 to cysteine. Treatment of A277C, V280C, T282C, A283C, I286C, A291C, and F301C mutant receptors the which that residues within the water-accessible binding of the of TM7 a mutant of the that TM7 of the receptor a of that from the binding of TM7 of activation of the receptor structural G protein-coupled receptors G protein-coupled angiotensin II type angiotensin transmembrane substituted cysteine accessibility G protein-coupled angiotensin II type angiotensin transmembrane substituted cysteine accessibility a of receptors that to a of and a seven domains that structural a to by a mechanism structural transmembrane domains (TM) receptor is to binding to activation of by movement of TM have activation of and to within the The of the of is to which to G to the receptor the angiotensin II and the G to the of following by of and of the of and by the receptor the by which the receptor those that and TM7 activation by a of the The of is to be following the receptor to which of TM residues can is the of is that within of the receptor a of receptor the a movement of the receptor following TM7 activation and the which G the receptor mutant is the binding site of the receptor is transmembrane and is to the binding site is within a water-accessible the binding pocket, from the of the receptor the transmembrane domain The of crevice is by residues that can and by residues that a structural binding the substituted cysteine accessibility we the and from The which from The of the receptor the by and from to the of and and of the seventh transmembrane domain of the receptor residues to the receptor residues to the the TM which is to the TM and to the of the to the the and the the is the and and the of residues the wild type receptor the receptors of the by and and and The a of and of and of of The and the a and and binding and binding and to and binding of 1 of and of from by binding binding the of 1 by a from and the from to a of The by the The binding the and the by The of binding the binding the of the the of receptor by the of a of of from to the The of binding to is the of binding of is the is the of and is the the from by and the the of 1 to of The to and a of that to of binding to The and to to The binding the and the by The of the of the of of the a of the receptor by the of the the the of II of the to the of the The of the of by the of The of the of by the of and of and the to of to the of the to we initially the the wild type the receptor of the that of the binding of the a binding the of the of the receptor to the binding pocket. of the receptor and binding of the wild type receptor and mutant the the A283C, the receptor a of The by The The of wild of residues of TM7 of the receptor the binding and we a of residues to by mutant receptor the of of receptors the binding of the and of the mutant receptors binding and which and which a receptors binding receptors from to that of the wild type receptor of to mutant type a of of the of TM7 of the receptor the binding pocket, receptor of binding to of the cysteine the to binding to seven mutant receptors the binding of the cysteine mutant receptors residues substituted and to the of mutant receptors the wild type receptors and a of The by The The The that of binding to mutant mutant receptors which binding to of the receptor and which binding and of the The and The of wild of and the of mutant receptors to we the The those substituted and of and The those substituted and ranging from to substituted the a of the the binding of the to receptor the to The to to the and receptors binding the the the mutant receptors and from the of ranging from to from mutant receptors and which a to mutant a of residues from the mutant receptors the of 1 a to a receptor The to and a of that to of binding to of and V280C, I286C, A291C, and and The and The and The of to TM7 of a of the to and the accessibility of the can be of receptor to is to that of the wild type receptor a of of of binding to of the receptors of the mutant receptor and mutant the the the mutant receptor a of The by The The The of a the of TM7 cysteine binding following we the of the receptor the receptor binding the from to that of the receptor We binding to the and receptors the receptor the receptor mutant a of binding the receptor that of the wild type receptor which binding of to mutant receptors the the transmembrane a receptors of and binding the of the mutant receptors to the receptor that to the and a the the of the the of The receptor binding following and mutant to wild type receptor by of wild We that receptor from a receptor and a of binding following a of and of binding and of mutant receptors the mutant receptors and a of The by The The The that of binding to mutant mutant receptors which binding to of the receptor and mutant binding and of the The and The of of which to the of the residues of TM7 within the binding of the receptor and to the structural underlying receptor binding a wild type receptor and a The is the of to a that a the and cysteine a to to a significant and to be by by the to that cysteine the binding site binding and binding from by receptor the of of the wild type can be that by of cysteine residues of the receptor to the to and to and be within the environment of the and be be a of the binding a that of the receptor to to binding we significant binding be by the that to and a method, which the and the domains of the receptor to the Using we binding the of the receptor the of the receptor to residues of receptor TM7 by to the that residues domain of is a domain by a the and the of which to and the to a pocket, that to be by the of a and and to the the of the binding pocket. is to the a that to be the binding of the and is of a underlying the following the of receptor TM7 residues by to of the receptor by the mutant receptors ranging from to residues that following residues to identified by residues a of the receptor a accessibility of the to the binding the residues the to be a that constitutes a site a of the water-accessible crevice identified to the binding and agonists residues that identified and have to receptor activation binding and the of the TM7 residues and the of the a that be the of the residues that have identified by and the of the transmembrane to the and the can be by the that the residues the and the receptor within residues the of the binding of the receptor the that a binding of the a we a of residues the binding and from of the receptor TM7 to the accessibility by the those residues a the of the transmembrane is and by TM7 of the receptor the residues and the binding is that residues the of from the binding residues but contribute forming the binding to the we that of and of the receptor the that the of the to receptor and of the that residues within TM7 contribute to forming the binding pocket. the and residues and by the of the the and that a the We the of structural that a the by which receptors structural from the to the we of the is that the of the which involves transmembrane is by binding and be by the receptor we accessibility of TM7 residues within the structural of the receptor to and the to the the wild type receptor We that those residues that to to binding the the mutant receptor those residues and that have to the wild type receptor and binding the receptor to that accessibility of TM7 residues within the binding the of the of which is of receptor activation and a of transmembrane movement residues of TM7 from the binding of TM7 residues and of to TM7 of residues binding a from the receptors and receptors which to TM7 to that have to of binding those that binding those mutant receptors that binding binding substituted activation the of seven transmembrane domains the that binding a of TM7 by a The water-accessible crevice forming the binding is to be and the to the receptor a G is the to to of those the of the receptor to be and TM7 and a of the we that TM7 be from the crevice forming the binding following activation of the we that the mutant a and of binding the mutant the wild type receptor be that the the to the binding the movement a receptor and a significant of from the receptor the the a of the receptor that the binding a receptor mutant which substituted is a mutant of the receptor the the wild type and is of a the of the activation of the receptor receptor activation is that the be of and the of that the those residues a is the the residues have that the of the receptor and that binding and of be to the receptor the and a receptor to the of the the that the receptor by the the receptor of TM7 to the binding which TM7 residues and to a water-accessible movement of TM7 is of and is to structural mechanism receptor activation by be a G protein-coupled receptors G protein-coupled angiotensin II type angiotensin transmembrane substituted cysteine accessibility G protein-coupled angiotensin II type angiotensin transmembrane substituted cysteine accessibility a of receptors that to a of and a seven domains that structural a to by a mechanism structural transmembrane domains (TM) receptor is to binding to activation of by movement of TM have activation of and to within the The of the of is to which to G to the receptor the angiotensin II and the G to the of following by of and of the of and by the receptor the by which the receptor those that and TM7 activation by a of the The of is to be following the receptor to which of TM residues can is the of is that within of the receptor a of receptor the a movement of the receptor following TM7 activation and the which G the receptor mutant is the binding site of the receptor is transmembrane and is to the binding site is within a water-accessible the binding pocket, from the of the receptor the transmembrane domain The of crevice is by residues that can and by residues that a structural binding the substituted cysteine accessibility we the and from The which from The of the receptor the by and from to the of and and of the seventh transmembrane domain of the receptor residues to the receptor residues to the the TM which is to the TM and to the of the to the the and the the is the and and the of residues the wild type receptor the receptors of the by and and and The a of and of and of of The and the a and and binding and binding and to and binding of 1 of and of from by binding binding the of 1 by a from and the from to a of The by the The binding the and the by The of binding the binding the of the the of receptor by the of a of of from to the The of binding to is the of binding of is the is the of and is the the from by and the the of 1 to of The to and a of that to of binding to The and to to The binding the and the by The of the of the of of the a of the receptor by the of the the the of II of the to the of the The of the of by the of The of the of by the of and of and the to and from The which from The of the receptor the by and from to the of and and of the seventh transmembrane domain of 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of the receptor and binding of residues of TM7 of the receptor the binding and we a of residues to by mutant receptor the of of receptors the binding of the and of the mutant receptors binding and which and which a receptors binding receptors from to that of the wild type receptor of to mutant type a of of the of TM7 of the receptor the binding pocket, receptor of binding to of the cysteine the to binding to seven mutant receptors the binding of the cysteine mutant receptors residues substituted and to the of mutant receptors the wild type receptors and a of The by The The The that of binding to mutant mutant receptors which binding to of the receptor and which binding and of the The and The of wild of and the of mutant receptors to we the The those substituted and of and The those substituted and ranging from to substituted the a of the the binding of the to receptor the to The to to the and receptors binding the the the mutant receptors and from the of ranging from to from mutant 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and cysteine a to to a significant and to be by by the to that cysteine the binding site binding and binding from by receptor the of of the wild type can be that by of cysteine residues of the receptor to the to and to and be within the environment of the and be be a of the binding a that of the receptor to to binding we significant binding be by the that to and a method, which the and the domains of the receptor to the Using we binding the of the receptor the of the receptor to residues of receptor TM7 by to the that residues domain of is a domain by a the and the of which to and the to a pocket, that to be by the of a and and to the the of the binding pocket. is to the a that to be the binding of the and is of a underlying the following the a accessibility of the to the binding the residues the to be a that constitutes a site a of the water-accessible crevice identified to the binding and agonists residues that identified and have to receptor activation binding and the of the TM7 residues and the of the a that be the of the residues that have identified by and the of the transmembrane to the and the can be by the that the residues the and the receptor within residues the of the binding of the receptor the that a binding of the a we a of residues the binding and from of the receptor TM7 to the accessibility by the those residues a the of the transmembrane is and by TM7 of the receptor the residues and the binding is that residues the of from the binding residues but contribute forming the binding to the we that of and of the receptor the that the of the to receptor and of the that residues within TM7 contribute to forming the binding pocket. the and residues and by the of the the and that a the We the of structural that a the by which receptors structural from the to the we of the is that the of the which involves transmembrane is by binding and be by the receptor we accessibility of TM7 residues within the structural of the receptor to and the to the the wild type receptor We that those residues that to to binding the the mutant receptor those residues and that have to the wild type receptor and binding the receptor to that accessibility of TM7 residues within the binding the of the of which is of receptor activation and a of transmembrane movement residues of TM7 from the binding of TM7 residues and of to TM7 of residues binding a from the receptors and receptors which to TM7 to that have to of binding those that binding those mutant receptors that binding binding substituted activation the of seven transmembrane domains the that binding a of TM7 by a The water-accessible crevice forming the binding is to be and the to the receptor a G is the to to of those the of the receptor to be and TM7 and a of the we that TM7 be from the crevice forming the binding following activation of the we that the mutant a and of binding the mutant the wild type receptor be that the the to the binding the movement a receptor and a significant of from the receptor the the a of the receptor that the binding a receptor mutant which substituted is a mutant of the receptor the the wild type and is of a the of the activation of the receptor receptor activation is that the be of and the of that the those residues a is the the residues have that the of the receptor and that binding and of be to the receptor the and a receptor to the of the the that the receptor by the the receptor of TM7 to the binding which TM7 residues and to a water-accessible movement of TM7 is of and is to structural mechanism receptor activation by be a The of which to the of the residues of TM7 within the binding of the receptor and to the structural underlying receptor binding a wild type receptor and a The is the of to a that a the and cysteine a to to a significant and to be by by the to that cysteine the binding site binding and binding from by receptor the of of the wild type can be that by of cysteine residues of the receptor to the to and to and be within the environment of the and be be a of the binding a that of the receptor to to binding we significant binding be by the that to and a method, which the and the domains of the receptor to the Using we binding the of the receptor the of the receptor to The residues of receptor TM7 by to the that residues domain of is a domain by a the and the of which to and the to a pocket, that to be by the of a and and to the the of the binding pocket. is to the a that to be the binding of the and is of a underlying the following the The a accessibility of the to the binding the residues the to be a that constitutes a site a of the water-accessible crevice identified to the binding and agonists residues that identified and have to receptor activation binding and the of the TM7 residues and the of the a that be the of the residues that have identified by and the of the transmembrane to the and the can be by the that the residues the and the receptor within residues the of the binding of the receptor the that a binding of the a we a of residues the binding and from of the receptor TM7 to the accessibility by the those residues a the of the transmembrane is and by TM7 of the receptor the residues and the binding is that residues the of from the binding residues but contribute forming the binding to the we that of and of the receptor the that the of the to receptor and of the that residues within TM7 contribute to forming the binding pocket. the and residues and by the of the the and that a the We the of structural that a the by which receptors structural from the to the we of the is that the of the which involves transmembrane is by binding and be by the receptor we accessibility of TM7 residues within the structural of the receptor to and the to the the wild type receptor We that those residues that to to binding the the mutant receptor those residues and that have to the wild type receptor and binding the receptor to that accessibility of TM7 residues within the binding the of the of which is of receptor activation and a of transmembrane movement residues of TM7 from the binding we that the mutant a and of binding the mutant the wild type receptor be that the the to the binding the movement a receptor and a significant of from the receptor the the a of the receptor We that the binding a receptor mutant which substituted is a mutant of the receptor the the wild type and is of a the of the activation of the receptor receptor activation is that the be of and the of that the those residues a is the the residues have that the of the receptor and that binding and of be to the receptor the and a receptor to the of the the that the receptor by the the receptor of TM7 to the binding which TM7 residues and to a water-accessible movement of TM7 is of and is to structural mechanism receptor activation by be a

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.005
Threshold uncertainty score0.188

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.019
GPT teacher head0.239
Teacher spread0.219 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations55
Published2003
Admission routes1
Has abstractyes

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