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Record W1995439954 · doi:10.1039/c2an35507h

Comparative study using Raman microspectroscopy reveals spectral signatures of human induced pluripotent cells more closely resemble those from human embryonic stem cells than those from differentiated cells

2012· article· en· W1995439954 on OpenAlexafffund
Yan Zhi Tan, S. O. Konorov, H. Georg Schulze, James M. Piret, Michael W. Blades, Robin F. B. Turner

Bibliographic record

VenueThe Analyst · 2012
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicSpectroscopy Techniques in Biomedical and Chemical Research
Canadian institutionsUniversity of British ColumbiaCanada's Michael Smith Genome Sciences Centre
FundersBritish Columbia Knowledge Development FundCanadian Institutes of Health Research
KeywordsEmbryonic stem cellInduced pluripotent stem cellRaman microspectroscopyCell biologyHuman Induced Pluripotent Stem CellsChemistryBiologyRaman spectroscopyMolecular biologyBiochemistryGenePhysicsOptics

Abstract

fetched live from OpenAlex

Raman microspectroscopy is a non-destructive, label-free optical technique that offers information-rich molecular analysis of living cells. We report here the first Raman spectral study of human induced pluripotent stem cells (hiPSCs), and compare their Raman features to those of human embryonic stem cells (hESCs) and differentiated progeny of hESCs. Raman spectra from 687 cm(-1) to 1073 cm(-1) were collected from living hiPSCs, hESCs and hESCs non-specifically differentiated for 20 days. Spectra of hiPSCs and hESCs were found to be highly similar, and both were distinguishable from differentiated hESCs in terms of relative Raman peak intensities and variances. Principal component analysis (PCA) of the spectra demonstrated a clear discrimination between hiPSCs and differentiated hESCs. These results suggested that reprogramming returned human somatic cells to a state where the overall cellular composition was similar to that of human embryonic stem cells. Some metabolic differences between the two groups of pluripotent cells could be inferred, however it was unclear whether or not these differences were related to reprogramming.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.003
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.000
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0010.001
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.055
GPT teacher head0.379
Teacher spread0.323 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations39
Published2012
Admission routes2
Has abstractyes

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