PimF, a Mannosyltransferase of Mycobacteria, Is Involved in the Biosynthesis of Phosphatidylinositol Mannosides and Lipoarabinomannan
Bibliographic record
Abstract
Phosphatidylinositol mannosides (PIMs) and their related molecules lipomannan (LM) and lipoarabinomannan (LAM) are important components of the mycobacterial cell wall. These molecules mediate host-pathogen interactions and exhibit immunomodulatory activities. The biosynthesis of these lipoglycans is not fully understood. In this study, we have identified a mycobacterial gene (Rv1500) that is involved in the synthesis of PIMs. We have named this gene pimF. Transposon mutagenesis of pimF of Mycobacterium marinum resulted in multiple phenotypes, including altered colony morphology, disappearance of tetracyl-PIM7, and accumulation of tetraacyl-PIM5. The syntheses of LAM and LM were also affected. In addition, the pimF mutant exhibited a defect during infection of cultured macrophage cells. Although the mutant and the cell of the marinum mutant the pimF of Mycobacterium of the These that is a that is involved in the of the of are the synthesis of LAM and this the of a involved in the of Phosphatidylinositol mannosides (PIMs) and their related molecules lipomannan (LM) and lipoarabinomannan (LAM) are important components of the mycobacterial cell wall. These molecules mediate host-pathogen interactions and exhibit immunomodulatory activities. The biosynthesis of these lipoglycans is not fully understood. In this study, we have identified a mycobacterial gene (Rv1500) that is involved in the synthesis of PIMs. We have named this gene pimF. Transposon mutagenesis of pimF of Mycobacterium marinum resulted in multiple phenotypes, including altered colony morphology, disappearance of tetracyl-PIM7, and accumulation of tetraacyl-PIM5. The syntheses of LAM and LM were also affected. In addition, the pimF mutant exhibited a defect during infection of cultured macrophage cells. Although the mutant and the cell of the marinum mutant the pimF of Mycobacterium of the These that is a that is involved in the of the of are the synthesis of LAM and this the of a involved in the of The mycobacterial cell interactions the and The cell of a the and a of that the and the cell mannosides (PIMs) of of and their lipomannan (LM) and lipoarabinomannan have in host-pathogen interactions and are the and of the the LAM in immunomodulatory including the of In addition, the LAM in the including Mycobacterium Mycobacterium Mycobacterium and Mycobacterium cell of and and of are mediate the of and have in the of the are lipoglycans of the is a the of and and the mycobacterial of have including LAM in in the Mycobacterium and Mycobacterium and in Mycobacterium their important is the biosynthesis of and that and LAM a that are related the of LM is a of and are and and The of is and the the of the of the of the of the is that is the of LM is LAM involved in these have not and of this and LM are a The and are the the of a is not in LM and LAM this study, we have identified a that the synthesis of and is involved in the biosynthesis of LAM and We have the that of LAM and LM the of and In the that in the we have this and marinum of mutagenesis of marinum were in and and and of of were and and and of marinum of the and of have marinum were and in were a of infection of and infection were and marinum were a of were identified of the marinum a that not the a the and of the of this a that in the and and were the of the These were the of marinum and the and were the the a and and of of and were marinum the These were were in the and in the were in the and in the were of were a of that were the of The were the in and the of were in a a and were The the of the The in and the of LAM and of LAM and the the of and were The were and in and were of LAM and were the also the is in mycobacterial LAM not LM of infection a The cell in in were a of in of and in the were of and a of infection of The infection in were the were in in of The these were and the macrophage were and of the a of The of and were were of marinum of is the biosynthesis of the mycobacterial cell wall. we have a the that in cell components the of the cell and this a of marinum and altered colony have and we have that exhibit altered and in and and We that colony is a and is fully the and the in this that this is the of cell mutant a a the colony exhibited and not The of the mutant including and the that of the cell not of the the mutant and the mutant are of the and the mutant are exhibit a the is cells. of the colony of pimF the gene that the in we of the mutant and of the marinum that the the of a we pimF that the is in the of that the pimF of marinum the of the In and are In and the marinum is the of the and not in and including and and a pimF that is a pimF not in the of of the that a of in the and in the These including a of including and We that involved in the biosynthesis of a cell the of pimF colony The cell of marinum that including and the synthesis of these in the we these In the were in of including and not the mutant and the not a of the mutant The mutant of and and and a these of of and and that these that in the of and these and were and the of of a of that in of the of that these a in the The and the are these we that and and The that the of is of and that the of is that of and that the marinum the mutant marinum and mutant and were in the and in the were of are and of of the of of the of PIMs. are the of and in and are the We that the were not in the were also not and identified and are of the that of pimF the altered and colony of the mutant the and and the colony These also the of the mutant the in the mutant In is not this is in in these mutant the the the these that is a that the biosynthesis of the synthesis of of LAM and LM are of LM and LAM the of the of these molecules this of involved in the of synthesis the synthesis of LAM and LM and have not are the the of these lipoglycans in and of is the identified in the of synthesis the synthesis of these are of LAM and is that of pimF the synthesis of LAM and we the of LAM and LM in the mutant and that of the in LAM and LM and the is in In the mutant LAM and LM were in the LAM and LM that LAM also that the of LAM in the mutant of LAM and LM were in the pimF of and These that is involved in the synthesis of LAM and of LAM and LM of LAM and LM were of and of were and mutant mutant mutant mutant and were in and The of LAM and LM are of the pimF including the of the the their of the are of the in their and the mycobacterial is of and that the LAM of a of and and that LAM a that the and of the in the of the pimF is the of the mutant is affected. were the the and the mutant of macrophage the were a were in and the is in that exhibited of in during the of infection of were the of pimF macrophage of that of the mutant the the infection of a and the the mutant and the the mutant also These that the pimF mutant is in the of LAM and LM in the in a The of the mutant and of not of the and the mutant of the the mutant and mutant infection of of infection of of this study, we have identified a mycobacterial a involved in the synthesis of PIMs. is the involved in a of synthesis that the of the of of this of pimF mutagenesis the synthesis of and resulted in the accumulation of of the mutant pimF the of that is the involved in synthesis that have identified and These of the of and of the the that is in a of including that the is involved in that and the and mediate the of synthesis In not the and a of that a the of The not is that a that is the synthesis of and LAM Although the of the is is that mediate the of is a this also that is involved in the biosynthesis of LM and The of in the pimF mutant is the of in the the and that is not a in the of LAM and the of LAM and LM in the mutant were and in the mutant pimF gene these that is a involved in the biosynthesis of LM and a of the 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mutant also These that the pimF mutant is in the of LAM and LM in the in a The of the mutant and of not this study, we have identified a mycobacterial a involved in the synthesis of PIMs. is the involved in a of synthesis that the of the of of this of pimF mutagenesis the synthesis of and resulted in the accumulation of of the mutant pimF the of that is the involved in synthesis that have identified and These of the of and of the the that is in a of including that the is involved in that and the and mediate the of synthesis In not the and a of that a the of The not is that a that is the synthesis of and LAM Although the of the is is that mediate the of is a this also that is involved in the biosynthesis of LM and The of in the pimF mutant is the of in the the and that is not a in the of LAM and the of LAM and LM in the mutant were and in the mutant pimF gene these that is a involved in the biosynthesis of LM and a of the biosynthesis of and the that The that of pimF not the synthesis 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the Although LAM the of macrophage these were and LAM the are LAM and the LAM the of cell the the mutant not exhibit in the of of in cell we the of LAM mycobacterial in LAM of is a In in LAM is the of the and the of the In addition, LAM of is in of cell and infection These the of in in not have in the pimF mutant in the of LAM in the that the mycobacterial cell is important the of the that exhibited the pimF not colony also of the infection of of cell biosynthesis and the of cell components in mycobacterial In this study, we have identified a mycobacterial a involved in the synthesis of PIMs. is the involved in a of synthesis that the of the of of this of pimF mutagenesis the synthesis of and resulted in the accumulation of of the mutant pimF the of that is the involved in synthesis that have identified and These of the of and of the the that is in a of including that the is involved in that and the and mediate the of synthesis In not the and a of that a the of The not is that a that 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How this classification was reachedexpand
Full frame distilled prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.
Codex and Gemma teacher scores by category
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.000 | 0.000 |
| Meta-epidemiology (narrow) | 0.000 | 0.000 |
| Meta-epidemiology (broad) | 0.001 | 0.000 |
| Bibliometrics | 0.000 | 0.000 |
| Science and technology studies | 0.000 | 0.000 |
| Scholarly communication | 0.000 | 0.000 |
| Open science | 0.000 | 0.000 |
| Research integrity | 0.000 | 0.000 |
| Insufficient payload (model declined to judge) | 0.000 | 0.000 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one teacher head, not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".