TEM-168, a Heretofore Laboratory-Derived TEM β-Lactamase Variant Found in an <i>Escherichia coli</i> Clinical Isolate
Bibliographic record
Abstract
There have been over 160 variants of the TEM-1 and TEM-2 penicillinases described, most of which also exhibit activity against extended-spectrum cephalosporins (www.lahey.org/Studies/). It was noted in 1994 that a T265M mutation (Ambler numbering) was often associated with active-site mutations E104K, R164S, G238S, and E240K in some TEM variants (4). Comparison of MICs and kinetic studies of TEM-1 variants with the amino acid substitutions T265M, G238S, G238S:T265M, G238S:E240K, and G238S:G240K:T265M constructed by in vitro mutagenesis showed that the T265M mutation had no measurable effect on the TEM-1 wild type or on the G238S or G238S:240K variant. To date, no naturally occurring T265M variant of TEM-1 has been reported, though currently, 22 TEM variants contain an M265 residue along with other residue changes (www.lahey.org/Studies/). Escherichia coli N08-1503 obtained by the National Microbiology Laboratory for advanced testing was resistant to ampicillin, cefazolin, and ampicillin-sulbactam, as determined by the submitting laboratory. Antimicrobial testing was carried out by disk diffusion and broth microdilution according to CLSI guidelines and Etests (AB Biodisk) according to manufacturer's instructions (Table (Table1)1) (1). The CLSI methods indicated that E. coli N08-1503 did not harbor an extended-spectrum β-lactamase (ESBL), though a reduced susceptibility to ceftazidime was noted. Analysis using the ESBL Etest strips yielded similar results. Interestingly, the cefepime ESBL Etest strip yielded a positive result. This strip is recommended outside of the United States when testing a strain with an inducible ampC gene (e.g., Enterobacter) or when a nondeterminable result is obtained. Broth microdilution confirmed the reduced susceptibility to cefepime and synergy with clavulanic acid, though the cefepime MICs were one or two doubling dilutions higher than the Etest results were. Resistance to amoxicillin-clavulanic acid and piperacillin-tazobactam and intermediate susceptibility to cefoxitin were also noted for E. coli N08-1503 and DH10B transformed with a plasmid (pT168) harboring blaTEM-168 (see below). TABLE 1. Antimicrobial data for E. coli N08-1503 and the transformants harboring pT168a PCR analysis results for β-lactamase genes were positive for TEM and negative for SHV, CTX-M, OXA-1, and CMY-2 types. Sequence analysis of the TEM amplicon revealed a translation product with a single amino acid change from TEM-1, a T261M change (T265M by Ambler numbering) caused by a C782T transition. This variant has been assigned the name TEM-168 (www.lahey.org/Studies). In the blaTEM-168 promoter region, we detected the G162T change that defines the strong P4 promoter (3, 5). Plasmid analysis showed that an ∼13-kb plasmid, pT168, harboring blaTEM-168 could be transformed into E. coli DH10B. Isoelectric focusing of crude extracts from E. coli N08-1503 and the DH10B transformant identified a single band of β-lactamase activity with a pI of 5.4. The resistance to β-lactam inhibitor combinations was likely due to the hyperproduction of plasmidic TEM-168 expressed from the P4 promoter, similar to what has been shown for TEM-1 (5, 6). Since the TEM-168 did not test positive with standard ESBL tests, it is easy to understand why this variant has not been described previously in clinical isolates. It was the unusual result with the cefepime ESBL Etest strip that made us continue our investigation to further characterize the TEM harbored by E. coli N08-1503.
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How this classification was reachedexpand
Full frame machine prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.
Distilled classifier scores by category (both heads)
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.000 | 0.000 |
| Meta-epidemiology (narrow) | 0.000 | 0.000 |
| Meta-epidemiology (broad) | 0.000 | 0.000 |
| Bibliometrics | 0.000 | 0.000 |
| Science and technology studies | 0.000 | 0.000 |
| Scholarly communication | 0.000 | 0.000 |
| Open science | 0.000 | 0.000 |
| Research integrity | 0.000 | 0.001 |
| Insufficient payload (model declined to judge) | 0.001 | 0.001 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".