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PS-222 Staphylococcus Capitis In Neonatal Late-onset Sepsis: Unexpected Worldwide Dissemination Of An Endemic Multi-resistant Clone

2014· article· en· W2004182889 on OpenAlexaboutno aff
Marine Butin, Patrícia Martins-Simões, Hajar Lemriss, Sanaâ Lemriss, François Vandenesch, Olivier Claris, JC Picaud, JP Rasigade, Frédéric Laurent

Bibliographic record

VenueArchives of Disease in Childhood · 2014
Typearticle
Languageen
FieldMedicine
TopicAntimicrobial Resistance in Staphylococcus
Canadian institutionsnot available
Fundersnot available
KeywordsMedicineSepsisclone (Java method)Staphylococcus aureusPediatricsStaphylococcal infectionsNeonatal sepsisImmunologyBacteriaGeneticsBiology

Abstract

fetched live from OpenAlex

Background Multi-resistant Staphylococcus capitis NRCS-A is involved in late-onset sepsis (LOS) in French NICUs. Aims To investigate the geographical distribution of NRCS-A, and to precise its susceptibility profile. Methods Twelve S. capitis isolates from distant NICUs (Australia, Belgium, France, United Kingdom, n = 3 each) and 2 S. capitis isolates from adult patients were analysed using PFGE, SCCmec typing, dru-typing, a MLST-like analysis, and antimicrobial susceptibility testing. To explore impact of vancomycin selective pressure, after 15 daily subcultures with vancomycin, we determined vancomycin, daptomycin and linezolid minimal inhibitory concentrations (MICs). Results All NICU S. capitis (i) shared >80% similarity of PFGE profile and were similar to NRCS-A profile, (ii) harboured a type V-related SCCmec element, (iii) exhibited the same dru-type, (iv) formed a monophyletic group, (v) harboured a same antimicrobial susceptibility profile including aminoglycosides and methicillin resistance, and vancomycin heteroresistance. These molecular and antimicrobial susceptibility profiles differed from those of adult isolates. An increase of vancomycin and daptomycin (but not linezolid) MICs was observed, significantly faster (p < 0.05) for NRCS-A isolates than other tested strains. Conclusion Our analysis demonstrates an unexpected worldwide distribution of S. capitis NRCS-A, specifically in NICUs. Recently, we collected complementary NICU isolates belonging to NRCS-A from Norway, Denmark, the Netherlands, USA, Brazil, New Zealand and Canada, confirming the worrisome dissemination of NRCS-A. Its multi-resistant profile and its ability to rapidly adapt to vancomycin selective pressure, constitute a selective advantage to NRCS-A in NICUs, and raise the issue of potential therapeutic failure and the need for alternative antimicrobial regimens.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.008
Threshold uncertainty score0.015

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.000
Science and technology studies0.0000.000
Scholarly communication0.0010.000
Open science0.0000.000
Research integrity0.0010.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.006
GPT teacher head0.265
Teacher spread0.258 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations3
Published2014
Admission routes1
Has abstractyes

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