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Record W2005681597 · doi:10.1142/s1793048006000203

STRUCTURAL BASIS OF ANTIFREEZE PROTEIN ACTION

2006· article· en· W2005681597 on OpenAlexaff
C.S. Strom, Xiangyang Liu, Zongchao Jia

Bibliographic record

VenueBiophysical Reviews and Letters · 2006
Typearticle
Languageen
FieldEnvironmental Science
TopicPhysiological and biochemical adaptations
Canadian institutionsQueen's University
Fundersnot available
KeywordsAntifreeze proteinIce crystalsCrystallographyChemistryCrystalliteChemical physicsPhysicsOptics

Abstract

fetched live from OpenAlex

Antifreeze Proteins (AFPs) modify the growth rates and orientations of ice crystal facets through attainment of the best structural match. The insect-type AFPs have ice binding surfaces (IBS) with regularly spaced binding intervals in two directions that engage the primary ice surfaces and reduce their growth rates preferentially. The primary ice surfaces are kinetically stable and have fixed orientations, since they are strongly bonded in two directions. The fish-type AFPs have one-dimensional helical and irregular globular IBSs that are either linearly extended with regular ice binding intervals, or have ice binding sites lacking spacing regularity. They adjust the orientations of the secondary ice surfaces, that have indeterminate face indices since they are strongly bonded in only one direction. The fish-type AFPs stabilize secondary ice surfaces and adjust their orientations by mimicking strong bonding directions, that are not present in the ice structure. The theory agrees with experimental observation and explains hitherto unexplained phenomena. The observed broad variation in prismatic and, more importantly, pyramidal ice crystallites produced in the presence of fish-type AFPs is explained, since these faces are secondary. The observed crystals triggered by most insect-type AFPs are disk shaped, because they consist of primary ice surfaces. The allegedly exceptional ice pyramids triggered by the insect-type TmAFP are the primary ice pyramid with fixed indices, and entirely different from the pyramids of the fish-type AFPs.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.475
Threshold uncertainty score0.175

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.026
GPT teacher head0.240
Teacher spread0.214 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2006
Admission routes1
Has abstractyes

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