Development and Evaluation of a Database of Dietary Bioaccumulation Test Data for Organic Chemicals in Fish
Bibliographic record
Abstract
Dietary bioaccumulation tests for fish have been conducted for about 40 years. Standardized test guidance has recently been developed. Test metrics of primary scientific and regulatory interest are the whole body depuration rate constant (kT), whole body growth corrected depuration rate constant (kTg), and corresponding chemical half-lives (t1/2 and t1/2g), dietary chemical absorption efficiency (AE), and biomagnification factor (BMF). A database of 3032 measurement end points for 477 discrete organic chemicals including 964 half-lives, 1199 AEs and 869 BMFs from 19 species (primarily trout and carp) was developed from the literature. Biological properties (e.g., organism weight, lipid content) and exposure conditions (e.g., temperature, feeding rate, dietary lipid content, exposure duration) are documented. Test chemicals range in molar mass from 120 to 1423 g·mol(-1) with log octanol-water partition coefficients (KOW) ranging from 0.8 to 14.3; 50% of the database entries are for polychlorinated biphenyls. The measured end points are derived from various protocols and sources of variability are described. The data are evaluated and categorized using proposed data quality (confidence) criteria derived from the standardized test protocol providing initial guidance for data users. Half-lives range from 0.13 to 2600 days; however, approximately 54% have an identifiable source of uncertainty. The data suggest that chemicals absorbed from the gastrointestinal tract with a log KOW ≥ ∼5 and at least as high as ∼9 have biomagnification potential in fish. A mechanistic bioaccumulation model is compared to the measured data and used to illustrate the influence of growth and biotransformation rates on the BMF.
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How this classification was reachedexpand
Full frame machine prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.
Distilled classifier scores by category (both heads)
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.019 | 0.037 |
| Meta-epidemiology (narrow) | 0.001 | 0.001 |
| Meta-epidemiology (broad) | 0.002 | 0.001 |
| Bibliometrics | 0.011 | 0.007 |
| Science and technology studies | 0.001 | 0.001 |
| Scholarly communication | 0.003 | 0.002 |
| Open science | 0.004 | 0.002 |
| Research integrity | 0.001 | 0.001 |
| Insufficient payload (model declined to judge) | 0.002 | 0.002 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".