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Association between the C3435T polymorphism of the MDR1 gene and Crohnʼs disease

2006· letter· en· W2009249179 on OpenAlexaff
Simon Lal, Joanne M. Stempak, Christine Law, Abdul Elkadri, Hillary Steinhart, Mark S. Silverberg

Bibliographic record

VenueInflammatory Bowel Diseases · 2006
Typeletter
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicInflammatory Bowel Disease
Canadian institutionsUniversity of Toronto
Fundersnot available
KeywordsCrohn's diseaseMedicineDiseaseGeneGastroenterologyInternal medicineGeneticsBiology

Abstract

fetched live from OpenAlex

To the Editor: We read with interest the recent case-case control study by Urcelay et al,1 in which they found an increased incidence of the C3435 allele and the homozygous CC genotype of the multidrug resistance gene (MDR)1 in Crohn's disease (CD). The MDR1 gene encodes P-glycoprotein 170, which acts as an intestinal epithelial efflux transporter pump and may play a role in protecting the epithelium against xenobiotics and bacterial products.2 The finding that MDR1 knockout mice develop colitis, which is reversed with antibiotics,3 provides support to the role of this gene in the pathogenesis of IBD through altered host-bacterial interplay. We recently genotyped the C3435T MDR1 polymorphism (rs 1045642) in 247 CD (43.7% female; 27.9% Jewish; 95.1% white) and 112 ulcerative colitis (UC; 54.5% female; 21.4% Jewish; 89.3% white) affected individuals and 512 unaffected family members (49.4% female; 22.5% Jewish; 93.9% white) from trio and tetrad families. Genotyping was performed using the Sequenom Mass Array 7K system (San Diego, CA) and matrix-assisted laser desorption-time of flight mass spectometry analysis. Phenotypic information was obtained from medical case notes for disease type, behavior, and location according to the Montreal classification.4 Associations with disease susceptibility and genotype-phenotype relationships were analyzed using the family-based association test. We found no association between the C3435T polymorphism and UC (z = 0.92; P = 0.36). However, over-transmission of the 3435T allele was significantly associated with CD (z = 2.26; P = 0.02), with the strongest association arising in Jewish patients (Z = 2.50; P = 0.01). Thus far, more studies have implicated MDR1 variation in UC rather than CD, leading to the suggestion that MDR1 may be a “UC-specific” gene.5 Our data and those of Urcelay and colleagues suggest that this is not the case. Indeed, although the mdr1 knockout mouse mentioned earlier displays a histologic picture similar to UC with superficial epithelial inflammation, it also displays some features consistent with CD, such as transmural B- and T-cell infiltrates.5 It is noteworthy, however, that our data suggest that over-transmission of the 3435T allele is associated with CD, whereas those of Urcelay and colleagues suggest that the same allele may in fact protect against the disease. Carriage of the TT genotype has been associated with reduced P-glycoprotein function in whites,6 but the mechanism by which this may confer susceptibility to, or protect against, CD remains unclear. As Ho et al5 pointed out in a recent review paper in this journal, the role that P-glycoprotein plays in the innate and adaptive immunity framework of the gastrointestinal tract remains a crucial area of future research. There has certainly been considerable heterogeneity in the reported associations between the MDR1 C3435T polymorphism and UC or CD; carriage of the 3435T allele, for example, was shown to confer susceptibility to UC but not CD in Scottish7 and German8 populations. Our data add to this heterogeneity and, as Urcelay and colleagues point out, these reported differences in MDR1 genotype associations are likely to be explained by ethnic diversity. The varied association of the MDR1 gene with IBD susceptibility certainly reinforces the importance of stratifying for differences in ethnic composition of study populations when carrying out such genetic association studies for potential disease susceptibility or protective genes.

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How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.006
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.007
Threshold uncertainty score0.015

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.006
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0000.000
Science and technology studies0.0010.001
Scholarly communication0.0010.001
Open science0.0000.000
Research integrity0.0070.004
Insufficient payload (model declined to judge)0.0040.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.006
GPT teacher head0.204
Teacher spread0.199 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations6
Published2006
Admission routes1
Has abstractno

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