The Genetic Bases for the Variation in the Lipo-oligosaccharide of the Mucosal Pathogen, Campylobacter jejuni
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Bibliographic record
Abstract
We have compared the lipo-oligosaccharide (LOS) biosynthesis loci from 11 Campylobacter jejunistrains expressing a total of 8 different ganglioside mimics in their LOS outer cores. Based on the organization of the genes, the 11 corresponding loci could be classified into three classes, with one of them being clearly an intermediate evolutionary step between the other two. Comparative genomics and expression of specific glycosyltransferases combined with in vitro activity assays allowed us to identify at least five distinct mechanisms that allowC. jejuni to vary the structure of the LOS outer core as follows: 1) different gene complements; 2) phase variation because of homopolymeric tracts; 3) gene inactivation by the deletion or insertion of a single base (without phase variation); 4) single mutation leading to the inactivation of a glycosyltransferase; and 5) single or multiple mutations leading to “allelic” glycosyltransferases with different acceptor specificities. The differences in the LOS outer core structures expressed by the 11 C. jejuni strains examined can be explained by one or more of the five mechanisms described in this work. We have compared the lipo-oligosaccharide (LOS) biosynthesis loci from 11 Campylobacter jejunistrains expressing a total of 8 different ganglioside mimics in their LOS outer cores. Based on the organization of the genes, the 11 corresponding loci could be classified into three classes, with one of them being clearly an intermediate evolutionary step between the other two. Comparative genomics and expression of specific glycosyltransferases combined with in vitro activity assays allowed us to identify at least five distinct mechanisms that allowC. jejuni to vary the structure of the LOS outer core as follows: 1) different gene complements; 2) phase variation because of homopolymeric tracts; 3) gene inactivation by the deletion or insertion of a single base (without phase variation); 4) single mutation leading to the inactivation of a glycosyltransferase; and 5) single or multiple mutations leading to “allelic” glycosyltransferases with different acceptor specificities. The differences in the LOS outer core structures expressed by the 11 C. jejuni strains examined can be explained by one or more of the five mechanisms described in this work. lipo-oligosaccharides cytidine monophosphate-N-acetylneuraminic acid 6-(5-fluorescein-carboxamido)-hexanoic acid succimidyl ester open reading frame heptose nucleotide. The abbreviated designations of glycolipids are according to IUPAC-IUC nomenclature Many pathogenic bacteria have variable cell-surface glycoconjugates such as capsules in Streptococcus spp. andNeisseria meningitidis (1Roberts I.S. Annu. Rev. Microbiol. 1996; 50: 285-315Crossref PubMed Scopus (515) Google Scholar), lipopolysaccharides in Gram-negative bacteria (2Preston A. Mandrell R.E. Gibson B.W. Apicella M.A. Crit. Rev. Microbiol. 1996; 22: 139-180Crossref PubMed Scopus (235) Google Scholar), and glycosylated surface-layer proteins (3Castric P. Cassels F.J. Carlson R.W. J. Biol. Chem. 2001; 276: 26479-26485Abstract Full Text Full Text PDF PubMed Scopus (160) Google Scholar). In mucosal pathogens, the variability of cell-surface polysaccharides has been shown to play a major role in virulence (4Moxon E.R. Kroll J.S. Curr. Top. Microbiol. Immunol. 1990; 150: 65-85PubMed Google Scholar). This variation is caused by the diversity of monosaccharide components and the linkages between them, derivatization with noncarbohydrate moieties, and in some cases, by the length and sequence of the repeating units. The variation of these glycan structures can sometimes be correlated with a specific gene complement, but it is probable that other genetic mechanisms are also employed to create variable cell-surface glycoconjugates. The DNA sequencing of the relevant genetic loci from multiple strains of a pathogen can provide insights into the genetic origins of important strain variable traits such as cell-surface glycoconjugates. The mucosal pathogen Campylobacter jejuni has been recognized as an important cause of acute gastroenteritis in humans (5Allos B.M. Clin. Infect. Dis. 2001; 32: 1201-1206Crossref PubMed Scopus (863) Google Scholar) and has been shown to have variable cell-surface carbohydrates that are associated with virulence (6Bacon D.J. Szymanski C.M. Burr D.H. Silver R.P. Alm R.A. Guerry P. Mol. Microbiol. 2001; 40: 769-777Crossref PubMed Scopus (226) Google Scholar, 7Guerry P. Szymanski C.M. Prendergast M.M. Hickey T.E. Ewing C.P. Pattarini D.L. Moran A.P. Infect. Immun. 2002; (in press)Google Scholar). Epidemiological studies have shown that Campylobacter infections are more common thanSalmonella infections in developed countries, and they are also an important cause of diarrheal diseases in developing countries.C. jejuni is also considered the most frequent antecedent infection to the development of Guillain-Barré syndrome, a form of neuropathy that is the most common cause of generalized paralysis since the eradication of poliomyelitis in developed countries (8Jacobs B.C. Rothbarth P.H. van der Meché F.G.A. Herbrink P. Schmitz P.I.M. de Klerk M.A. van Doorn P.A. Neurology. 1998; 51: 1110-1115Crossref PubMed Scopus (618) Google Scholar). The core oligosaccharides of low molecular weight lipo-oligosaccharides of C. jejuni strains have been shown to molecular of the of oligosaccharides to of and have been in C. jejuni strains of structures by the of LOS is considered to be a virulence of mucosal pathogens, this to the A.P. Prendergast M.M. Immunol. Microbiol. 1996; PubMed Google Scholar). The molecular between C. jejuni LOS outer core structures and has also been to as a mechanisms in the development of Guillain-Barré Scopus Google of the C. jejuni strains in this the of the the LOS outer core biosynthesis M.A. 1998; Scopus Google Moran A.P. J. PubMed Scopus Google PubMed Scopus Google PubMed Scopus Google PubMed Scopus Google Moran A.P. J. PubMed Scopus Google Moran A.P. J. PubMed Scopus Google A. B.W. Mol. Microbiol. PubMed Scopus Google and and Moran A.P. J. PubMed Scopus Google Moran A.P. J. PubMed Scopus Google the of the A. B.W. Mol. Microbiol. PubMed Scopus Google Scholar) and and in a Moran A.P. J. PubMed Scopus Google Scholar, Moran A.P. J. PubMed Scopus Google Scholar, PubMed Scopus Google Scholar, C.M. Moran A.P. J. PubMed Scopus Google Scholar) and M.A. 1998; Scopus Google Scholar) the LOS outer core structures of C. jejuni strains of the The of C. jejuni is on and it that the is to LOS J. Clin. Microbiol. PubMed Scopus Google Scholar, A.P. J. Microbiol. PubMed Scopus Google Scholar). and genetic studies that polysaccharides (6Bacon D.J. Szymanski C.M. Burr D.H. Silver R.P. Alm R.A. Guerry P. Mol. Microbiol. 2001; 40: 769-777Crossref PubMed Scopus (226) Google Scholar, B.W. Mol. Microbiol. PubMed Scopus Google Scholar). the loci and LOS biosynthesis are in the C. jejuni J. B.W. C. M.A. van PubMed Scopus Google Scholar) and gene are to be frequent in C. jejuni J. Clin. Microbiol. 2001; PubMed Scopus Google Scholar, A. J. 2001; PubMed Scopus Google Scholar), it is that strains the could different LOS outer cores. to the LOS outer core structures 1) with the specific strain with the the are also The of the in LOS and the of their are of a of the mechanisms by these The of the sequence of C. jejuni J. B.W. C. M.A. van PubMed Scopus Google Scholar) has the of loci in the biosynthesis of cell-surface carbohydrates LOS A. B.W. Mol. Microbiol. PubMed Scopus Google Scholar, A. B.W. Mol. Microbiol. PubMed Scopus Google Scholar). The sequence also to the corresponding LOS biosynthesis in other C. jejunistrains J. J. Biol. Chem. Full Text Full Text PDF PubMed Scopus Google Scholar, P. Ewing C.P. Hickey T.E. Prendergast M.M. Moran A.P. Infect. Immun. PubMed Scopus Google Scholar), allowed the of in the of and acid or to the LOS outer cell-surface structures such as the LOS are recognized as by the it is that these structures to the of the The C. jejuni strains in this shown to a total of 8 different LOS outer and The LOS biosynthesis loci of C. jejuni and C. jejuni to have common as to strain J. J. Biol. Chem. Full Text Full Text PDF PubMed Scopus Google Scholar), provide a differences in LOS outer cores. mechanisms other differences in gene are in a of LOS outer cores. In the strain C. jejuni the gene in the of the of the LOS outer core shown to be a This in the expression of a LOS outer core compared with strain PubMed Scopus Google Scholar, J. J. Biol. Chem. Full Text Full Text PDF PubMed Scopus Google Scholar). J. B.W. C. M.A. van PubMed Scopus Google Scholar) that homopolymeric of variable length are in in the biosynthesis of C. jejuni a form of of these A. B.W. Mol. Microbiol. PubMed Scopus Google Scholar) in a gene a that with an or a in the expression of a or a ganglioside in C. jejuni We that the gene as a in C. jejuni and as a in C. jejuni that in the expression of a or J. J. Biol. Chem. Full Text Full Text PDF PubMed Scopus Google Scholar). In this the mechanisms by C. jejuni to outer core In to other of expression of to variable homopolymeric assays to that acid are the expression of glycosyltransferases with different a that the of C. LOS outer cores. The C. jejuni strains in this are in The strains from the C. jejuni and from the C. jejuni strains on to the different glycosyltransferases and or The at a total of with with and with DNA from jejuni strains the DNA of DNA and as by the or the of the the the as described by the to specific DNA as described by the and DNA from of a to gene that the mutation to the or the The with the and to the of The DNA of the LOS biosynthesis loci of C. jejuni and to to the LOS biosynthesis loci of the other strains described in this work. The to of that of the LOS The by and to and sequence the that from the and DNA sequencing an DNA and the sequencing the acid oligosaccharides as described A. E.R. J. Biol. Chem. 1996; Full Text Full Text PDF PubMed Scopus Google Scholar). by and the at to The and The and The and The and a of the meningitidis J. and in a that the of The of and the by the of and with to of the The by the and as described J. Biol. Chem. 1996; Full Text Full Text PDF PubMed Scopus Google Scholar). The from the with the We have compared the LOS biosynthesis loci of jejuni strains that loci and of jejuni strains that strains and the and the strain J. J. Biol. Chem. Full Text Full Text PDF PubMed Scopus Google Scholar). The LOS outer core structures of the 11 strains in this and The organization of the LOS biosynthesis us to these C. jejuni strains into three and The LOS biosynthesis loci of the strains have the LOS biosynthesis loci of the strains and of the three strains have gene is in and three are to and are described in the LOS biosynthesis and of the sequence and by sequence to the gene of the strain gene nomenclature in the is also with and 1998; PubMed Scopus Google biosynthesis with and is with and the with in the of the strains that have a with vitro activity J. J. Biol. Chem. Full Text Full Text PDF PubMed Scopus Google Scholar) and P. Ewing C.P. Hickey T.E. Prendergast M.M. Moran A.P. Infect. Immun. PubMed Scopus Google with In vitro activity J. J. Biol. Chem. Full Text Full Text PDF PubMed Scopus Google Scholar) and A. B.W. Mol. Microbiol. PubMed Scopus Google or vitro activity J. J. Biol. Chem. Full Text Full Text PDF PubMed Scopus Google Scholar) and P. Ewing C.P. Hickey T.E. Prendergast M.M. Moran A.P. Infect. Immun. PubMed Scopus Google acid with acid and A. B.W. Mol. Microbiol. PubMed Scopus Google with and P. Ewing C.P. Hickey T.E. Prendergast M.M. Moran A.P. Infect. Immun. PubMed Scopus Google with and in with with with with with The to the gene of the strain gene nomenclature in the is also This work. in a The DNA of the LOS loci from the strains can be with the being The DNA sequence is between the the of in J. J. Biol. Chem. 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Full Text Full Text PDF PubMed Scopus Google Scholar). genomics of LOS biosynthesis loci from strains expressing different LOS outer with it to that C. jejuni also to that are or that different acceptor specificities. 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J. Biol. Chem. Full Text Full Text PDF PubMed Scopus Google Scholar) that the acid by the of a gene that from C. jejuni by activity and of gene of the LOS biosynthesis shown to be from some strains that have a acid on the of their LOS outer core and it is to be LOS We J. J. Biol. Chem. Full Text Full Text PDF PubMed Scopus Google Scholar) that from C. jejuni an the from C. jejuni and We these and Guerry P. Ewing C.P. Hickey T.E. Prendergast M.M. Moran A.P. Infect. Immun. PubMed Scopus Google Scholar) that the corresponding gene in is of the LOS outer core and it because it sequence with from C. jejuni the of to the other it that and have strains have an of We that one of the variable the in a or a also has it to have activity as in the LOS outer core structures 1) and from in vitro assays and have it is that the of in is to it The low of sequence between and be a of to different acceptor in and the acceptor is to an or in the acceptor is to a that is with an The in vitro assays allowed us to are or the of vary between the of the acid and that some as a at have a on the vitro is these the of the or the of the are to be in their it is probable that the are in to LOS The of variable cell-surface structures be to a pathogen in to the The five different mechanisms described in this can be The different gene are a of as as of gene are at least other distinct of LOS biosynthesis loci on the C. jejuni C. jejuni and LOS loci in this because the corresponding LOS outer core structures have been C. jejuni and the LOS outer core of C. jejuni ganglioside structures C.M. Moran A.P. J. PubMed Scopus Google Scholar). these of LOS loci the of that could be in the LOS biosynthesis loci of C. has shown that phase variation an the of C. jejuni the of of some of the homopolymeric that a of LOS outer core structures is to be expressed in some of the mutations to be more the homopolymeric the between C. jejuni and has the of an infection because these strains from Infect. Immun. PubMed Google Scholar). a one acid can from a to it is also that such mutations could the of an infection or an In this have shown that C. jejuni can to five mechanisms to vary LOS outer cores. mechanisms can as as a or a one acid or be more as in the of be to the expression of other C. jejuni cell-surface carbohydrates as different and mechanisms or other have the of We Szymanski and and with
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Full frame distilled prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.
Codex and Gemma teacher scores by category
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.001 | 0.001 |
| Meta-epidemiology (narrow) | 0.000 | 0.000 |
| Meta-epidemiology (broad) | 0.000 | 0.000 |
| Bibliometrics | 0.000 | 0.000 |
| Science and technology studies | 0.000 | 0.000 |
| Scholarly communication | 0.000 | 0.000 |
| Open science | 0.001 | 0.000 |
| Research integrity | 0.000 | 0.000 |
| Insufficient payload (model declined to judge) | 0.000 | 0.000 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it