MétaCan
Menu
Back to cohort
Record W2011558612 · doi:10.1128/aac.49.2.864-865.2005

First Extended-Spectrum-β-Lactamase (CTX-M-15)-Producing <i>Salmonella enterica</i> Serotype Typhimurium Isolate Identified in Lebanon

2005· letter· en· W2011558612 on OpenAlexaboutno aff
Carole Ayoub Moubareck, Florence Doucet‐Populaire, Monzer Hamzé, Ziad Daoud, François‐Xavier Weill

Bibliographic record

VenueAntimicrobial Agents and Chemotherapy · 2005
Typeletter
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicAntibiotic Resistance in Bacteria
Canadian institutionsnot available
Fundersnot available
KeywordsSalmonella entericaSerotypeSalmonellaMicrobiologyEnterobacteriaceaeBiologyVirologyEscherichia coliBacteriaGeneticsGene

Abstract

fetched live from OpenAlex

In Salmonella, most extended-spectrum β-lactamases (ESBLs) are derivatives of TEM and SHV β-lactamase families, although other groups, including PER and CTX-M, have been described recently (1, 2). CTX-M-type ESBLs display levels of resistance to cefotaxime and ceftriaxone significantly higher than those to ceftazidime (2). Since 1995, CTX-M-type ESBLs have disseminated dramatically in several parts of the world (1). In January 2004, a Salmonella enterica serotype Typhimurium isolate, CAM18, was recovered from a stool specimen collected from a 6-year-old child upon admission to a hospital in Northern Lebanon. The child had no history of travel. The isolate had a high resistance level to cefotaxime and ceftazidime and was also resistant to several aminoglycosides, sulfamethoxazole-trimethoprim, and tetracycline. It was susceptible to cefoxitin, imipenem, quinolones, and chloramphenicol. ESBL production was detected by the double-disk synergy test (6). The ESBL phenotype was transferred to Escherichia coli K-12 resistant to nalidixic acid with an efficiency of 10−2 per donors. Certain transconjugants also acquired resistance to tetracycline and kanamycin (TC-pCAM18-1), while others acquired resistance to tetracycline alone (TC-pCAM18-2). The addition of clavulanic acid reduced the MICs of all β-lactams tested (Table ​(Table11). TABLE 1. Characteristics of S. enterica serotype Typhimurium CAM18, E. coli K-12, and two transconjugants Results of isoelectric focusing (8) and of amplifications using TEM, SHV, CTX-M, and OXA-1 primers (3, 10, 11) are shown in Table ​Table1.1. The β-lactamase with a pI of 5.4 was most probably TEM-1. Sequencing of blaOXA-1 amplicons revealed the presence of OXA-30, a β-lactamase with a pI of 7.3 differing from OXA-1 by one amino acid and recently reported in E. coli (4) and S. enterica serotype Typhimurium (5). Sequencing of blaCTX-M amplicons revealed that coding regions were 100% identical to the coding region of the blaCTX-M-15 gene (GenBank accession number {type:entrez-nucleotide,attrs:{text:AY044436,term_id:15636728,term_text:AY044436}}AY044436). Amplification and sequencing of the entire coding sequence of blaCTX-M-15 (14) confirmed that the β-lactamase with a pI of 8.6 was CTX-M-15, an enzyme that has been previously identified by several researchers (for a recent review, see reference 1). Unlike most CTX-M enzymes, CTX-M-15, an Asp-240-Gly variant of CTX-M-3, increased the catalytic efficiency against ceftazidime (12), as observed with MIC results (Table ​(Table11). The presence of ISEcp1, a mobile sequence located upstream of several CTX-M genes, was investigated by a PCR assay as previously described (13). Sequencing of PCR products obtained with isolate CAM18 and transconjugants revealed that the ISEcp1 element was located in the same position as that found in Indian and Turkish isolates (7, 9). Moreover, the 160-bp sequence upstream of blaCTX-M-15 was 100% identical to the corresponding sequences of Indian (GenBank accession number {type:entrez-nucleotide,attrs:{text:AY044436,term_id:15636728,term_text:AY044436}}AY044436) and Canadian (accession number {type:entrez-nucleotide,attrs:{text:AY458016,term_id:38606064,term_text:AY458016}}AY458016) isolates. Kanamycin resistance was associated only with strain TC-pCAM18-1, while tetracycline resistance was exhibited by both transconjugants. This result in addition to plasmid purification revealed that blaTEM and kanamycin resistance genes reside on a plasmid of 20 kb and blaCTX-M-15, blaOXA-30, and tetracycline resistance genes reside on a larger plasmid of 60 kb. We report for the first time the isolation of a CTX-M-type ESBL in Lebanon. In addition, this is also the first report of an ESBL-producing Salmonella in Lebanon. A study done in 2003 at St. George hospital (Beirut, Lebanon) on 49 Salmonella strains showed 100% susceptibility to ceftazidime and cefotaxime (Z. Daoud, personal communication). The appearance of the CTX-M-15-producing S. enterica serotype Typhimurium in the community in 2004 is a serious threat to public health.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: none
GenreCandidate signal: Other · Consensus signal: none
Teacher disagreement score0.014
Threshold uncertainty score0.027

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0010.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0020.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.009
GPT teacher head0.231
Teacher spread0.223 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreOther

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations27
Published2005
Admission routes1
Has abstractyes

Explore more

Same venueAntimicrobial Agents and ChemotherapySame topicAntibiotic Resistance in BacteriaFrench-language works237,207