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First report of <i>Pepper chat fruit viroid</i> in capsicum pepper in Canada

2011· article· en· W2012477728 on OpenAlex

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

aboutThe title or abstract carries a Canadian signal from the geographic lexicon.
no affNo Canadian affiliation: this work is invisible to an affiliation-only frame.
No Canadian affiliation. An affiliation-only frame, the usual design, would never have seen this work. It is one of the works that make the case for inverting the frame.

Bibliographic record

VenueNew Disease Reports · 2011
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicPlant Virus Research Studies
Canadian institutionsnot available
Fundersnot available
KeywordsPepperViroidPotato spindle tuber viroidInoculationBiologyHorticultureCapsicum annuumSolanumGenBankCultivarChlorosisBotanyPlant virusVirusVirologyGene

Abstract

fetched live from OpenAlex

In the summer of 2009 in a greenhouse in the south of Ontario, Canada, up to 3% of the plants of the pepper cvs. Score and Lamborgini (Capsicum annuum) showed mild growth reduction and abnormally small fruits (Fig. 1). Symptoms were observed spreading along the rows. These observations suggested the presence of Pepper chat fruit viroid (PCFVd), a viroid recently described infecting capsicum pepper in the Netherlands (Verhoeven et al., 2009). For diagnosis, two small-sized pepper fruits of cultivar Lamborgini were sent by the grower to the Plant Protection Service of the Netherlands. The fruits were tested in a single sample by reverse transcription polymerase chain reaction (RT-PCR) with primer pairs Pospi1-RE/FW (Verhoeven et al., 2004) and AP-FW1/RE2 (Verhoeven et al., 2009), which produced amplicons of 193 and 335 bp for PCFVd, respectively. The complete viroid genome of 348 nt was derived from overlapping sequence fragments, after directly sequencing RT-PCR products (GenBank Accession No. HQ731652). BLAST analysis of the obtained sequence showed a 100% of sequence identity to that of the PCFVd isolate from the Netherlands (FJ409044) (Verhoeven et al., 2009). In addition, the Canadian isolate was mechanically inoculated to young plants, four each for capsicum pepper cv. Yolo Wonder and tomato (Solanum lycopersicum) cv. Moneymaker. The tomato plants developed symptoms after four weeks of inoculation, including chlorosis and stunting, whereas no symptoms were observed on the post-inoculated pepper plants. After six weeks, the presence of the viroid in the post-inoculated plants was confirmed for both plant species by RT-PCR with primers Pospi1-RE/FW in bulked samples of four plants. Although PCFVd may be transmitted through capsicum pepper seed, a direct relationship between the outbreaks in Canada and the Netherlands seems unlikely as different cultivars from different seed companies were involved (Verhoeven et al., 2009). Symptomless infected ornamental host plants may have been the source of infection of pepper plants in the Ontario greenhouse, as reported for the Potato spindle tuber viroid in tomato. Thus ornamentals may pose a phytosanitary risk for vegetable crops (Navarro et al., 2009; Verhoeven et al., 2010). The grower was encouraged to notify the Canadian phytosanitary authorities of these findings.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.038
Threshold uncertainty score0.582

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.033
GPT teacher head0.219
Teacher spread0.186 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it