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Record W2015185827 · doi:10.1134/s0026893306060082

Characterization of low-molecular-weight i-type glutenin subunit genes from diploid wheat in relation to the gene family structure

2006· article· en· W2015185827 on OpenAlex
Z. -C., Yuling Wei, Hai Long, Zehong Yan, Bernard R. Baum, Youliang Zheng

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

affAt least one author lists a Canadian institution in the pinned OpenAlex snapshot.

Bibliographic record

VenueMolecular Biology · 2006
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicWheat and Barley Genetics and Pathology
Canadian institutionsAgriculture and Agri-Food Canada
Fundersnot available
KeywordsGluteninGeneGeneticsProtein subunitBiologyGene familyMolecular biologyGenome

Abstract

fetched live from OpenAlex

The low-molecular-weight (LMW) glutenin subunits are important for aspects of wheat quality and dough processing, and the LMW-i type glutenin is one of the typical glutenins. However, a detailed description of the DNA structure and encoded polypeptides of the LMW-i type glutenin subunit gene family is still lacking. In this study, two LMW-i type glutenin subunit genes, i.e., LMW-Eb from Triticum boeoticum and LMW-Em from T. monococcum, were obtained from genomic DNA, respectively. The LMW-Eb is a novel gene and the LMW-Em has the identical sequence with a known gene. To comprehensively understand the LMW-i type glutenin subunit gene family structure, all known LMW-i type glutenin subunit genes were comparatively analyzed. Detailed comparison of these genes revealed a high-level of single nucleotide polymorphisms (SNP). In these LMW glutenin subunits, the percentage of glutamine and proline were approximately 38.27 and 12.77%, respectively. They started directly from the repetitive domain with ISQQQ- after the signal sequence, which the N-terminal regions were absent. In addition, there are three consensus repeat motifs (i.e. PPFSQQQQ, PPISQQQQ and PPYSQQQQ) in the repetitive domains of these LMW glutenin subunits. The C-terminal I domain is the most conserved region, while the domains of C-terminal II and III are more variable. The eight cysteine residues are highly conserved. These genes could be clustered into two major groups, among which one group could be further divided into five subgroups. Furthermore, to date, all known LMW-i type glutenin subunit genes are located on chromosome 1A, whereas no LMW-i type glutenin subunit gene is obtained from the B and D genomes in wheat.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.330
Threshold uncertainty score0.226

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.007
GPT teacher head0.198
Teacher spread0.191 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it