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Record W2022818603 · doi:10.1142/s0218127409025225

AN ATLAS OF ROBUST, STABLE, HIGH-DIMENSIONAL LIMIT CYCLES

2009· article· en· W2022818603 on OpenAlexaff
Roy Wilds, Leon Glass

Bibliographic record

VenueInternational Journal of Bifurcation and Chaos · 2009
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGene Regulatory Network Analysis
Canadian institutionsMcGill University
Fundersnot available
KeywordsLimit cycleAttractorMathematicsLimit (mathematics)HypercubeDifferential equationDynamical systems theoryDelay differential equationCurse of dimensionalityApplied mathematicsMathematical analysisDiscrete mathematicsPhysics

Abstract

fetched live from OpenAlex

We present a method for constructing dynamical systems with robust, stable limit cycles in arbitrary dimensions. Our approach is based on a correspondence between dynamics in a class of differential equations and directed graphs on the n-dimensional hypercube (n-cube). When the directed graph contains a certain type of cycle, called a cyclic attractor, then a stable limit cycle solution of the differential equations exists. A novel method for constructing regulatory systems that we call minimal regulatory networks from directed graphs facilitates investigation of limit cycles in arbitrarily high dimensions. We identify two families of cyclic attractors that are present for all dimensions n ≥ 3: cyclic negative feedback and sequential disinhibition. For each, we obtain explicit representations for the differential equations in arbitrary dimension. We also provide a complete listing of minimal regulatory networks, a representative differential equation, and a bifurcation analysis for each cyclic attractor in dimensions 3–5. This work joins discrete concepts of symmetry and classification with analysis of differential equations useful for understanding dynamics in complex biological control networks.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.364
Threshold uncertainty score0.285

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.008
GPT teacher head0.248
Teacher spread0.240 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations13
Published2009
Admission routes1
Has abstractyes

Explore more

Same venueInternational Journal of Bifurcation and ChaosSame topicGene Regulatory Network AnalysisFrench-language works237,207