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Record W2023154099 · doi:10.1074/jbc.m109.023267

Identification of Residues in the Drug Translocation Pathway of the Human Multidrug Resistance P-glycoprotein by Arginine Mutagenesis

2009· article· en· W2023154099 on OpenAlexafffund
Tip W. Loo, M. Claire Bartlett, David M. Clarke

Bibliographic record

VenueJournal of Biological Chemistry · 2009
Typearticle
Languageen
FieldMedicine
TopicDrug Transport and Resistance Mechanisms
Canadian institutionsUniversity of Toronto
FundersCanadian Institutes of Health Research
KeywordsMutantATP-binding cassette transporterMutagenesisBiochemistryArginineTransmembrane domainBiologyChemistryAmino acidGeneTransporter

Abstract

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P-glycoprotein (P-gp, ATP-binding cassette B1) is a drug pump that extracts toxic drug substrates from the plasma membrane and catalyzes their ATP-dependent efflux. To map the residues in the drug translocation pathway, we performed arginine-scanning mutagenesis on all transmembrane (TM) segments (total = 237 residues) of a P-gp processing mutant (G251V) defective in folding (15% maturation efficiency) (glycosylation state used to monitor folding). The rationale was that arginines introduced into the drug-binding sites would mimic drug rescue and enhance maturation of wild-type or processing mutants of P-gp. It was found that 38 of the 89 mutants that matured had enhanced maturation. Enhancer mutations were found in 11 of the 12 TM segments with the largest number found in TMs 6 and 12 (seven in each), TMs that are critical for P-gp-drug substrate interactions. Modeling of the TM segments showed that the enhancer arginines were found on the hydrophilic face, whereas inhibitory arginines were located on a hydrophobic face that may be in contact with the lipid bilayer. It was found that many of the enhancer arginines caused large alterations in P-gp-drug interactions in ATPase assays. For example, mutants A302R (TM5), L339R (TM6), G872R (TM10), F942R (TM11), Q946R (TM11), V982R (TM12), and S993R (TM12) reduced the apparent affinity for verapamil by ∼10-fold, whereas the F336R (TM6) and M986R (TM12) mutations caused at least a 10-fold increase in apparent affinity for rhodamine B. The results suggest that P-gp contains a large aqueous-filled drug translocation pathway with multiple drug-binding sites that can accommodate the bulky arginine side chains to promote folding of the protein. P-glycoprotein (P-gp, ATP-binding cassette B1) is a drug pump that extracts toxic drug substrates from the plasma membrane and catalyzes their ATP-dependent efflux. To map the residues in the drug translocation pathway, we performed arginine-scanning mutagenesis on all transmembrane (TM) segments (total = 237 residues) of a P-gp processing mutant (G251V) defective in folding (15% maturation efficiency) (glycosylation state used to monitor folding). The rationale was that arginines introduced into the drug-binding sites would mimic drug rescue and enhance maturation of wild-type or processing mutants of P-gp. It was found that 38 of the 89 mutants that matured had enhanced maturation. Enhancer mutations were found in 11 of the 12 TM segments with the largest number found in TMs 6 and 12 (seven in each), TMs that are critical for P-gp-drug substrate interactions. Modeling of the TM segments showed that the enhancer arginines were found on the hydrophilic face, whereas inhibitory arginines were located on a hydrophobic face that may be in contact with the lipid bilayer. It was found that many of the enhancer arginines caused large alterations in P-gp-drug interactions in ATPase assays. For example, mutants A302R (TM5), L339R (TM6), G872R (TM10), F942R (TM11), Q946R (TM11), V982R (TM12), and S993R (TM12) reduced the apparent affinity for verapamil by ∼10-fold, whereas the F336R (TM6) and M986R (TM12) mutations caused at least a 10-fold increase in apparent affinity for rhodamine B. The results suggest that P-gp contains a large aqueous-filled drug translocation pathway with multiple drug-binding sites that can accommodate the bulky arginine side chains to promote folding of the protein. The human multidrug resistance P-glycoprotein (P-gp, ATP-binding cassette B1) 2The abbreviations used are: P-gpP-glycoproteinNBDnucleotide-binding domainHEKhuman embryonic kidneyTMtransmembraneTMDtransmembrane domainM14M3,6,9,12-tetraoxatetradecane-1,14-diyl bismethanethiosulfonate. is an ATP-dependent drug pump that mediates efflux of a broad range of hydrophobic compounds out of the cell (1.Ambudkar S.V. Dey S. Hrycyna C.A. Ramachandra M. Pastan I. Gottesman M.M. Annu. Rev. Pharmacol. Toxicol. 1999; 39: 361-398Crossref PubMed Scopus (1929) Google Scholar). It is expressed in the epithelium of liver, kidney, and gastrointestinal tract and at the blood-brain or blood-testes barrier where it functions to protect us from cytotoxic compounds. It is clinically important because it contributes to multidrug resistance in diseases such as cancer and AIDS (1.Ambudkar S.V. Dey S. Hrycyna C.A. Ramachandra M. Pastan I. Gottesman M.M. Annu. Rev. Pharmacol. Toxicol. 1999; 39: 361-398Crossref PubMed Scopus (1929) Google Scholar). P-glycoprotein nucleotide-binding domain human embryonic kidney transmembrane transmembrane domain 3,6,9,12-tetraoxatetradecane-1,14-diyl bismethanethiosulfonate. P-gp is an ATP-binding cassette transporter of 1280 amino acids that consists of two homologous halves (2.Chen C.J. Chin J.E. Ueda K. Clark D.P. Pastan I. Gottesman M.M. Roninson I.B. Cell. 1986; 47: 381-389Abstract Full Text PDF PubMed Scopus (1721) Google Scholar). Each half begins with a transmembrane domain (TMD) containing six TM segments followed by a nucleotide-binding domain (NBD). A key goal to understanding the mechanism of P-gp drug transport is to identify the amino acids that line the drug translocation pathway. Because P-gp extracts drug substrates from the lipid bilayer, the drug-binding pocket/drug translocation pathway are predicted to reside in the transmembrane (TM) segments. showed that the were for drug 1999; Full Text Full Text PDF PubMed Scopus Google Scholar). of the as showed that and were for drug substrate Full Text Full Text PDF PubMed Scopus Google Scholar). The results of mutagenesis and with drug substrates that all of the TM segments to the drug-binding pocket/drug translocation pathway in PubMed Scopus Google Scholar). The is to identify the amino acids that line the drug translocation pathway. It is important to identify amino acids that line the drug translocation pathway and to the a of P-gp in the M. PubMed Scopus Google that was on the PubMed Scopus Google or the of P-gp in the S. PubMed Scopus Google Scholar). that the P-gp may be a or in a that M.M. S.V. PubMed Scopus Google Scholar). to map the drug translocation pathway to arginine-scanning mutagenesis of the TM segments of a P-gp processing mutant (G251V) that maturation maturation efficiency) Full Text Full Text PDF PubMed Scopus Google Scholar). can be used to folding of P-gp in by the of P-gp from a to a that contains Because mutant we can an introduced arginine or a on The rationale for arginine-scanning mutagenesis was that arginine a large barrier for into the lipid because it is S. PubMed Scopus Google Scholar). of an arginine into a lipid face of the mutant would whereas an arginine introduced into the face of the drug translocation pathway would maturation of the mutant P-gp. an on we the of the Full Text Full Text PDF PubMed Scopus Google Scholar). arginines introduced into the predicted whereas introduced into predicted to face the drug translocation pathway A was that arginines maturation. The residues at were at to that with drug substrates in mutagenesis and were found to be the drug-binding Full Text Full Text PDF PubMed Scopus Google Full Text Full Text PDF PubMed Scopus Google Scholar). that arginine-scanning mutagenesis be a for residues in the drug translocation pathway and for the of the TM segments in the that promote maturation to identify that are important for P-gp-drug interactions because to mimic drug rescue of P-gp. It was found that the of arginines as in to promote maturation of P-gp folding for a as because processing mutants be Full Text Full Text PDF PubMed Scopus Google Scholar). Because arginine mutations enhance folding of P-gp in be as enhancer we performed arginine-scanning mutagenesis on TMs of P-gp processing mutant to their in the membrane and to identify residues that line the drug translocation pathway. of human P-gp were used in A P-gp containing the for at the was used to the expressed from P-gp Full Text PDF PubMed Google Scholar). The P-gp was to a at the to of the expressed by Full Text Full Text PDF PubMed Scopus Google Scholar). were introduced into wild-type or processing mutant P-gp as Full Text PDF PubMed Google Scholar). For arginine-scanning mutagenesis of TM segments the of mutant P-gp was to an arginine at (TM5), (TM6), (TM10), (TM11), or an arginine enhancer was it was introduced into the wild-type P-gp For the of mutant Pharmacol. PubMed Scopus Google was to the or The of all the mutant was by the S. PubMed Scopus Google Scholar). The mutant were expressed in human embryonic kidney in with as Full Text Full Text PDF PubMed Scopus Google Scholar). cell extracts were to and with Full Text Full Text PDF PubMed Scopus Google Scholar). The were and the of P-gp to P-gp was the and an The of P-gp was by with or as 1999; Full Text Full Text PDF PubMed Scopus Google Full Text PDF PubMed Google Scholar). were expressed in and by as Full Text Full Text PDF PubMed Scopus Google Scholar). of P-gp was by with Full Text Full Text PDF PubMed Scopus Google Scholar). A of the P-gp was with an of that had and in The was and ATPase was in the of of rhodamine or The mutants and were expressed in The were as Full Text Full Text PDF PubMed Scopus Google and in A of the membrane was in the or of of for at The were on for and with of the 3,6,9,12-tetraoxatetradecane-1,14-diyl for on Full Text Full Text PDF PubMed Scopus Google PubMed Scopus Google Scholar). The were by the of and containing and The were to and with a P-gp. and can be because the with a on PubMed Scopus Google Scholar). The were and the of was the and an Each half of P-gp consists of a with six TM segments and an The two halves of P-gp can be expressed as that expressed in the cell to a transporter Full Text PDF PubMed Google Scholar). the for and human M. PubMed Scopus Google Scholar). The were on the of the multidrug transporter that was in the with in an PubMed Scopus Google Scholar). The are with mutagenesis and of human P-gp M. PubMed Scopus Google PubMed Scopus Google Scholar). The processing is located in the that TM segments and The is defective in folding because it maturation with the maturation of wild-type P-gp mutant the of the is that of arginines into TM segments such as (TM5), and (TM6) maturation of the P-gp processing mutant Full Text Full Text PDF PubMed Scopus Google Scholar). were introduced into because mutagenesis and with drug substrates that the drug-binding of at (TM5), or (TM6) with drug substrates caused of P-gp ATPase Full Text Full Text PDF PubMed Scopus Google Full Text Full Text PDF PubMed Scopus Google Full Text Full Text PDF PubMed Scopus Google Scholar). that residues and are predicted to the of the TM segments at the and The results of a arginine-scanning mutagenesis on Full Text Full Text PDF PubMed Scopus Google the in and of arginine mutations that or on maturation of mutant cell extracts of wild-type P-gp mutant mutants or in or mutants or in were to with cell extracts of mutant were with or were to cell extracts of wild-type P-gp mutant in or in were to the of P-gp to was cell extracts of mutants or mutants residues or were to The of the and are To the of we mutants containing a arginine at of TMs were with the mutant The was the at cell extracts were to of the of the arginines on maturation of mutant P-gp are in The P-gp found in with the wild-type P-gp was the protein. the in mutant was the protein. introduced in or in and of the mutant showed on maturation of the protein. The had The and mutations maturation of the because P-gp was The and folding of the mutant because the was the To that the promote maturation of the were to with that the P-gp was to whereas the and were to results that the whereas the contains in the To arginines that to the processing folding of P-gp or for the of the the and mutations were introduced into wild-type P-gp. were with mutant or (TM5), the were a and cell extracts were to The results in of and in wild-type and can be used to an introduced arginine maturation of P-gp. that the of in wild-type P-gp was of the enhancer arginines or in showed that the maturation of mutants that had processing mutations located the Full Text Full Text PDF PubMed Scopus Google Scholar). The was introduced into the and processing mutants and expressed in showed that the maturation of mutants and The of arginines introduced at in the TMs of mutant were were with the mutant cell extracts were to The results from a on are in a and for Full Text Full Text PDF PubMed Scopus Google Scholar). the of P-gp to P-gp for arginine mutants in TMs P-gp showed a maturation of with for the mutant arginines introduced into the of of mutant maturation of the protein. of the arginines introduced into the of maturation was as an arginines at that maturation as and to reside a hydrophobic face of residues and enhancer arginine at the of showed an increase in maturation The results of arginine-scanning mutagenesis of were from with Full Text Full Text PDF PubMed Scopus Google Scholar). It was found that all arginines introduced into the of maturation of the Enhancer arginines were at the of at and enhancer mutations were arginine-scanning mutagenesis was performed on TM segments the enhancer mutations and maturation of the mutant by The was found to promote maturation of the P-gp processing mutant Full Text Full Text PDF PubMed Scopus Google Scholar). introduced into that maturation of the mutant were located at or the residues of were as an residues and to be on a hydrophobic face because of arginines at maturation of mutant the residues of to face a hydrophilic because of arginines at of 12 the side of the maturation. The results of arginine-scanning mutagenesis of showed a that was to the results are in a and to face the lipid because of arginines at maturation of P-gp. in the predicted to face a hydrophilic because arginines introduced at 11 of the 12 maturation. arginine enhancer mutations were at and The was the because it maturation to enhancer mutations to be on the face of TM enhancer mutations and were The and enhancer mutations were in maturation of the processing mutant because of P-gp was as the protein. The that hydrophobic and hydrophilic arginine-scanning mutagenesis a hydrophobic face because of the introduced arginines maturation. arginines introduced at and maturation of the The enhancer mutations in at and maturation of mutant by at least The largest number of enhancer mutations in was found in The of a hydrophobic face in that it is in contact with the lipid bilayer. mutagenesis was performed on the six TM segments in the half of P-gp. The of the arginine mutations on maturation of mutant are in The results with the arginine mutants were to with of arginines at all at the predicted of maturation of the protein. to be a hydrophilic face at the of because mutants and whereas mutant showed an increase in maturation two enhancer mutations and were were predicted to reside on the face of the TM on of a The was in maturation because it showed maturation of arginines at all in maturation of mutant enhancer mutations were found in The TM to hydrophobic and hydrophilic because all arginines and that maturation were predicted to on face of all arginines introduced into the half of the TM maturation of mutant it was found that of arginines at and maturation by at least enhancer mutations and were found in The was in mutant because it had a maturation of The mutants F942R and Q946R had maturation of arginine enhancer mutations were found in that enhanced maturation of mutant by at least is the largest number of enhancer mutations found in was and their were of and to a hydrophobic face because the and mutations maturation of mutant The mechanism of drug substrate by P-gp that the contains multiple drug-binding sites in a drug-binding Full Text Full Text PDF PubMed Scopus Google Scholar). of a large arginine side at in the translocation pathway in ATPase with at least of an arginine into a affinity drug-binding or translocation pathway would ATPase P-gp a it would be that of the introduced arginines would all ATPase To enhancer arginines or P-gp-drug we introduced into a wild-type P-gp The wild-type a that the be by Full Text Full Text PDF PubMed Scopus Google Scholar). interactions can be with P-gp because drug substrates P-gp ATPase of P-gp ATPase in the of drug substrates to be a of P-gp-drug interactions because was a with drug transport S.V. I. Full Text Full Text PDF PubMed Scopus Google Scholar). The drug substrates and rhodamine were for and were because are drug substrates of P-gp K. Gottesman M.M. Pastan I. PubMed Scopus Google Scholar). and rhodamine were because of drug substrates used in mutagenesis to the drug-binding sites of P-gp Full Text Full Text PDF PubMed Scopus Google Full Text Full Text PDF PubMed Scopus Google Full Text Full Text PDF PubMed Scopus Google Scholar). Full Text Full Text PDF PubMed Scopus Google and PubMed Scopus Google are by P-gp. of the ATPase of wild-type P-gp and the M986R (TM12) enhancer wild-type are in The were expressed in P-gp was from the the and by The were with and ATPase were in the of of rhodamine or P-gp ATPase showed the M. Gottesman M.M. Roninson I.B. B. Full Text Full Text PDF PubMed Scopus Google increase in to a and a at drug of wild-type ATPase was and with rhodamine and of ATPase was with rhodamine and The results with mutant M986R (TM12) are in were in the of and rhodamine B. The mutant showed in apparent for and rhodamine The for was with for and for rhodamine with for The for by were with and verapamil because were in or It was that the mutant showed an increase in ATPase to for wild-type in the ATPase was in the it that the of the M986R enhancer was to increase the of P-gp to with or rhodamine B. arginine enhancer mutations found in were introduced into wild-type P-gp. Because we that of the arginine enhancer mutations in TM segments and to line the drug-binding Full Text Full Text PDF PubMed Scopus Google we of the enhancer mutations found in The arginine enhancer mutations from that were introduced into wild-type P-gp were (TM5), A302R (TM5), (TM5), F336R (TM6), and L339R The mutant were expressed in by and for ATPase in the of of rhodamine or The of the enhancer arginines on ATPase are in The on are in of the enhancer arginines had on verapamil interactions with P-gp. or ATPase was with mutants and two mutants were the that of ATPase with of the drug substrates ATPase was with mutants A302R (TM5), L339R (TM6), G872R (TM10), (TM10), F942R (TM11), Q946R V982R (TM12), and S993R It that a in apparent affinity for verapamil was for the in with mutants because showed an in for verapamil mutant showed an increase in apparent affinity for verapamil with an of of enhancer arginines on apparent affinity of P-gp for drug enhancer mutations were introduced into a wild-type P-gp wild-type or mutant were expressed in and by The were with and ATPase were in the of drug The of verapamil or rhodamine to ATPase by are Each is the = of the mutants that reduced ATPase had reduced ATPase A302R (TM5), F336R (TM6), L339R (TM6), (TM10), G872R (TM10), F942R (TM11), (TM11), Q946R (TM11), (TM12), V982R (TM12), and S993R (TM12) showed a with The of all of mutants were to for had and ATPase It had ATPase enhanced ATPase and in The in the with the and ATPase was that of the enhancer arginines caused a increase in F336R (TM6) and the for by and mutations (TM12), (TM12), M986R (TM12), and (TM12) ATPase was for mutants (TM10), G872R (TM10), F942R (TM11), (TM11), V982R (TM12), and S993R (TM12) of the mutants showed large in apparent affinity for mutant showed a increase in mutations in to an increase in apparent affinity for M986R showed with and showed with with for wild-type The of enhancer mutations on P-gp interactions with rhodamine are in and (TM12) showed an increase in with rhodamine with wild-type P-gp and (TM12) showed in with rhodamine rhodamine ATPase was for mutants (TM10), F942R (TM11), (TM11), Q946R (TM11), V982R (TM12), and S993R (TM12) of the mutants showed large in apparent affinity for rhodamine the of the enhancer arginines was to increase the apparent affinity of P-gp for rhodamine B. F336R (TM6), (TM12), M986R (TM12), (TM12), and (TM12) rhodamine for of ATPase The results that mutants at least with hydrophobic substrates the of a bulky side It be that all of the enhancer arginine mutants P-gp as the in the wild-type and and showed ATPase with of the substrates that were To mutations or P-gp-drug we performed mutant and as Full Text Full Text PDF PubMed Scopus Google Scholar). is because the at and with the can be because P-gp on The drug substrate protect the mutant from For example, we found that of the enhancer into mutant reduced apparent affinity for by Full Text Full Text PDF PubMed Scopus Google Scholar). the or mutations were introduced into mutant The were from mutants and The were in the of of followed by with for on was performed at to of the The were to A in of was with The mutants the of of to by and showed of with and The results suggest that the and P-gp interactions with that the mechanism that P-gp to and transport many hydrophobic is that it contains multiple drug-binding sites in a drug-binding and that drug by an mechanism Full Text Full Text PDF PubMed Scopus Google Scholar). The results of arginine-scanning mutagenesis of the TM segments are with The drug-binding and the translocation pathway to be because of the large arginine side at 89 of the 237 in the TM segments maturation were 38 arginines that enhanced folding of P-gp. The enhancer arginines to promote folding a for the of the because enhance folding of as as processing mutants The of the 38 enhancer arginines suggest that it is that enhancer arginine would be to with a in TM of the an mechanism enhanced folding of P-gp by the enhancer The to accommodate the side of arginine at many the drug-binding is with the that the drug-binding is to the PubMed Scopus Google and is hydrophobic as by PubMed Scopus Google Scholar). a we showed that it was for an enhancer to promote folding of P-gp processing mutants with processing mutations located the Full Text Full Text PDF PubMed Scopus Google Scholar). The enhancer promote maturation of P-gp processing mutants containing mutations in the the the two halves of the the and we showed that the Full Text Full Text PDF PubMed Scopus Google and (TM6) Full Text Full Text PDF PubMed Scopus Google enhancer arginines maturation of processing mutants such as and suggest that processing mutations and enhancer mutations are folding in P-gp. The results that the of processing drug and arginine enhancer mutations on folding of P-gp Full Text Full Text PDF PubMed Scopus Google Scholar). The predicted that processing mutations as in the folding and P-gp as a folding with and of the TM segments. substrates or arginine enhancer mutations promote the TM segments and P-gp to the folding to a a it was found that enhancer arginines to promote folding interactions with residues in TM segments Full Text Full Text PDF PubMed Scopus Google Scholar). two of the enhancer arginine mutants and showed ATPase with of the drug The enhancer arginines showed ATPase the of a of showed least with at least of the of the drug of mutants had with drug substrate with results the for multiple drug-binding For example, mutants A302R and L339R caused 10-fold in apparent affinity for verapamil had on the apparent affinity for or rhodamine an increase in with had with F336R had ATPase apparent affinity for rhodamine was mutant M986R had on ATPase apparent affinity for rhodamine was by results that drug substrates with residues in the drug-binding and that be residues for drug the results of arginine-scanning mutagenesis of the TM segments were as it was found that TM segments to hydrophobic and hydrophilic The hydrophobic would be predicted to face the lipid bilayer, whereas the hydrophilic face would be predicted to the drug translocation P-gp to an drug-binding because introduced at sites the be with compounds PubMed Scopus Google Scholar). The arginine enhancer mutations that were in the TM segments were all located on hydrophilic to a hydrophobic face because arginines introduced at all maturation to be in the lipid in the predicted aqueous-filled The of the may TM to be For example, a that Full Text Full Text PDF PubMed Scopus Google and PubMed Scopus Google of TM to be a key that to in the PubMed Scopus Google Full Text Full Text PDF PubMed Scopus Google D.P. PubMed Scopus Google Scholar). The predicted of the enhancer mutations in the of the of human P-gp are in For the of TM that the of the enhancer mutations is and is from the Because TM segments multiple enhancer are for It was found that hydrophilic of all the TM segments the predicted drug-binding of the TM segments to a hydrophobic face because of arginines into maturation of the processing mutant The of the residues predicted to on the hydrophobic as by arginine-scanning mutagenesis are in It was found that all of the predicted hydrophobic of the TM segments were located on that would reside the lipid bilayer. was a the arginine-scanning mutagenesis results and the of the of the TM segments of human P-gp. The of P-gp cassette was in the where the are and the are S. PubMed Scopus Google Scholar). in P-gp that are to in human P-gp A and that were found to promote or maturation in the arginine mutagenesis are in and The predicted of all of TM segments and were in the and human the of and to be to the results with arginine-scanning the hydrophilic and hydrophobic in P-gp and were in to in human P-gp A and the human of P-gp for the of and A and For the results of arginine-scanning mutagenesis that was located in the drug-binding because of an arginine at maturation of the or processing mutants Full Text Full Text PDF PubMed Scopus Google Scholar). the it was that a mutant containing a at showed of P-gp ATPase with of are with the human P-gp A and For the results of arginine-scanning mutagenesis are in with the for human P-gp in and introduced at and maturation of human P-gp. residues are predicted to be the drug-binding in human P-gp. all of are predicted to face the lipid bilayer. the human P-gp because it was found that of a introduced at caused of ATPase Full Text Full Text PDF PubMed Scopus Google Scholar). introduced into and be with at is reduced Full Text Full Text PDF PubMed Scopus Google Scholar). results are with the of human P-gp A and mutagenesis and would suggest that human P-gp in is found in a because introduced into the be the mutants were with at Full Text Full Text PDF PubMed Scopus Google Scholar). The is with the of P-gp into a lipid that of the S. Full Text Full Text PDF PubMed Scopus Google Scholar). of P-gp showed of PubMed Scopus Google Scholar). on the human P-gp that the K. S. S.V. PubMed Scopus Google Scholar). for the in the of and in human and is that in the It that are many in the P-gp transport K. S.V. Full Text Full Text PDF PubMed Scopus Google Scholar). The P-gp may a that contains or It be that the of amino the and human drug resistance and to S. Roninson I.B. PubMed Scopus Google Scholar). predicted that arginine enhancer mutations maturation of the P-gp processing mutant because were located the drug translocation pathway and the of drug is by the that arginine introduced at many of the that maturation of mutant P-gp to be in P-gp-drug interactions. For example, all of the that showed of ATPase of introduced with drug substrates (TM5), (TM6) Full Text Full Text PDF PubMed Scopus Google and PubMed Scopus Google showed enhanced maturation arginines were introduced at into the P-gp processing mutant and Full Text Full Text PDF PubMed Scopus Google Scholar). maturation was with the (TM12) a key for interactions with S. Pastan I. Gottesman M.M. 1999; PubMed Scopus Google Scholar). it was found that of the in P-gp that showed of ATPase of introduced with the substrates or Full Text Full Text PDF PubMed Scopus Google Full Text Full Text PDF PubMed Scopus Google were located in the predicted drug-binding of human P-gp A and P-gp was in the of two of ATPase S. PubMed Scopus Google Scholar). predicted to with the two or verapamil were of the enhancer arginine residues with residues in P-gp that are in drug showed that of drug-binding residues were The that P-gp folding be by arginines at many the that it be to folding at multiple in mutant with For example, defective folding and to the cell of mutants of the ATP-binding cassette transmembrane S. Cell. Full Text PDF PubMed Scopus Google and C.A. PubMed Scopus Google the diseases and of mutant can be to and to the cell A goal to diseases to mimic drug rescue of P-gp by compounds that would with transmembrane or mutants to promote folding and to the cell in Rev. PubMed Scopus Google Scholar). The results of arginine mutagenesis suggest that may be many in the mutant that with compounds to in arginine-scanning mutagenesis that all the TM segments an drug translocation pathway that contains multiple drug-binding The mechanism for the of P-gp to many drug substrates or enhanced folding of arginines may be in an mechanism for drug and TM segments.

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How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.067
Threshold uncertainty score0.218

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.013
GPT teacher head0.251
Teacher spread0.238 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Published2009
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Same venueJournal of Biological ChemistrySame topicDrug Transport and Resistance MechanismsFrench-language works237,207