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Record W2028845652 · doi:10.1099/ijs.0.036848-0

Terrimonas pekingensis sp. nov., isolated from bulking sludge, and emended descriptions of the genus Terrimonas , Terrimonas ferruginea , Terrimonas lutea and Terrimonas aquatica

2012· article· en· W2028845652 on OpenAlexfundno aff
Decai Jin, Ping Wang, Zhihui Bai, Bo Jin, Zhisheng Yu, Xinxin Wang, Guoqiang Zhuang, Hongxun Zhang

Bibliographic record

VenueINTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · 2012
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGenomics and Phylogenetic Studies
Canadian institutionsnot available
FundersKey Technologies Research and Development ProgramBeef Cattle Research Council
KeywordsBiology16S ribosomal RNAPhylogenetic treeStrain (injury)GenusMicrobiologyBotanyBacteriaGeneGeneticsAnatomy

Abstract

fetched live from OpenAlex

A Gram-negative, strictly aerobic, non-motile and non-spore-forming rod that produced white, viscous colonies, designated QH(T), was isolated from bulking sludge collected from a municipal wastewater treatment plant in Beijing, China. Phylogenetic analysis based on 16S rRNA gene sequences showed that strain QH(T) belonged to the genus Terrimonas and shared 96.3 % sequence similarity with Terrimonas lutea DY(T), 94.1 % with Terrimonas ferruginea ATCC 13524(T) and 93.8 % with Terrimonas aquatica RIB1-6(T). Strain QH(T) contained iso-C15 : 0, summed feature 3 (comprising one or more of C16 : 1ω7c, C16 : 1ω6c and iso-C15 : 0 2-OH) and iso-C15 : 1 G as the predominant fatty acids. The predominant polar lipid of strain QH(T) and members of the genus Terrimonas was phosphatidylethanolamine. The major isoprenoid quinone of strain QH(T) was MK-7 and the DNA G+C content was 41.0 mol%. DNA-DNA relatedness between strain QH(T) and T. lutea BCRC 17944(T), T. ferruginea BCRC 17943(T) and T. aquatica BCRC 17941(T) was 32, 23 and 22 %, respectively. On the basis of phylogenetic inference, differential phenotypic data and low DNA-DNA relatedness with members of the genus Terrimonas, strain QH(T) represents a novel species, for which the name Terrimonas pekingensis sp. nov. is proposed. The type strain is QH(T) ( = CICC 10452(T) = NCCB 100397(T)). The descriptions of the genus Terrimonas and T. ferruginea, T. lutea and T. aquatica are also emended.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.849
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.001
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.016
GPT teacher head0.230
Teacher spread0.214 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations43
Published2012
Admission routes1
Has abstractyes

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