IDO-induced immunosuppressive tryptophan catabolism following primary HIV infection
Bibliographic record
Abstract
We showed in cross-sectional studies that tryptophan (Trp) catabolism into kynurenine (Kyn) by IDO enzyme expressed by dendritic cells (DC) contributes to regulatory T-cells (Tregs) expansion and immune suppression in chronic HIV infection. We prospectively assessed Trp catabolism and anti-inflammatory response following primary HIV infection (PHI). Plasma and Peripheral blood mononuclear cells (PBMCs) were longitudinally collected in 41 PHI patients (infection <90 days), 24 remained untreated (ART-naive) and 17 were ART-treated one year later. In addition, samples from elite controllers (EC, n=12) and healthy subjects (HS, n=12) were also assessed. IDO enzymatic activity marker (Kyn/Trp ratio) was measured by isotope dilution tandem mass spectrometry. IL-6, IL-18, TNF-α and IP-10 plasma levels were assessed by Luminex. Frequency of Tregs (CD4+CD25highCD127lowFOXP3high), CD11c+ myeloid DC (mDC) and CD123+ plasmacytoid DC (pDC) as well as HLA-DR/CD38 co-expression of on T-cells were assessed. PHI patients had elevated Kyn/Trp ratio compared to HS and EC and further increased during the chronic phase, while normalized following ART. Accordingly, an increase of Treg frequency was observed at the baseline and continues to increase in the chronic phase only for those remaining untreated, when compared to HS and EC. Conversely, the frequency of mDC and pDC decreases over time only for those who remained untreated. Higher Kyn/Trp ratios were inversely correlated with the frequency of mDC and pDC at PHI and for those untreated. Importantly, the highest level of immune activation (HLA-DR+CD38+ CD8 T-cells) was observed during PHI followed by a decrease in chronic phase in ART-naïve and became comparable to EC and HS when receiving ART. Importantly, Kyn/Trp ratio was correlated with level of CD8 T-cell activation during PHI and for those who remained untreated. In line with this, positive correlations were observed between Kyn/Trp ratio and levels of IL-18 and TNF-α as well as markers of HIV disease progression IL-6 and IP-10. The progressive increase of Kyn/Trp ratio observed in the chronic phase of HIV infection in contrast to decreased viral load and T-cell activation, support the contribution of tissue damage and/or myeloid inflammatory syndrome in addition to viral replication for the development of immunosuppression.
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How this classification was reachedexpand
Full frame machine prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.
Distilled classifier scores by category (both heads)
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.000 | 0.000 |
| Meta-epidemiology (narrow) | 0.000 | 0.000 |
| Meta-epidemiology (broad) | 0.000 | 0.000 |
| Bibliometrics | 0.000 | 0.000 |
| Science and technology studies | 0.000 | 0.000 |
| Scholarly communication | 0.000 | 0.000 |
| Open science | 0.000 | 0.000 |
| Research integrity | 0.000 | 0.000 |
| Insufficient payload (model declined to judge) | 0.001 | 0.000 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".