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Record W2033019910 · doi:10.5539/jas.v4n12p243

Cloning and Characterization of a NBS-LRR Resistance Gene from Peanut (Arachis hypogaea L.?

2012· article· en· W2033019910 on OpenAlexvenueno aff
Yixiong Zheng, Chunjuan Li, Yu Liu, Caixia Yan, Tingting Zhang, Weijian Zhuang, Shihua Shan

Bibliographic record

VenueJournal of Agricultural Science · 2012
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicPeanut Plant Research Studies
Canadian institutionsnot available
FundersNational Natural Science Foundation of China
KeywordsGeneBiologyGeneticsArachis hypogaeaComplementary DNAHomology (biology)Plant disease resistanceArachisOpen reading frameR geneGenomeCloning (programming)Molecular biologyPeptide sequenceBotany

Abstract

fetched live from OpenAlex

The nucleotide-binding site (NBS)-Leucine-rich repeat (LRR) gene family accounts for the largest number of known disease resistance genes, and is one of the largest gene families in plant genomes. In the present study, based on the NBS domain, resistance gene analogues (RGAs) have been isolated from peanut, which named PnAG3. A full-length cDNA, PnAG3 was obtained by rapid amplification of cDNA ends (RACE) method. Sequence analysis indicated that the length of PnAG3 was 1 882 bp, including a complete open reading frame of 1 335 bp encoding PnAG3 protein of 444 amino acids. Multiple analysis showed that it had a certain homology with known resistance proteins, among which Arachis cardenasii resistance protein had the highest homology (48.01%). The polypeptide has a typical structure of nonTIR-NBS-LRR genes. Real-time fluorescence quantitative PCR analysis showed that after A. flavus infection, the expression of PnAG3 gene in J11 (A. flavus resistance species) has increased 16.68, 11.16 and 25.96 times in seed coat, kernel and pericarp, respectively. But it only increased 2-3 times in JH1012 (A. flavus sensitive species). The cloning of putative resistance gene from peanut provides a basis for studying the structure and function of peanut disease-resistance relating genes and disease resistant genetic breeding in peanut.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.003
Threshold uncertainty score0.005

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0010.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.019
GPT teacher head0.227
Teacher spread0.207 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations3
Published2012
Admission routes1
Has abstractyes

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Same venueJournal of Agricultural ScienceSame topicPeanut Plant Research StudiesFrench-language works237,207