MétaCan
Menu
Back to cohort
Record W2033488250 · doi:10.1186/1742-5573-4-15

Case-cohort design in practice – experiences from the MORGAM Project

2007· article· en· W2033488250 on OpenAlexfundno aff
Sangita Kulathinal, Juha Karvanen, Olli Saarela, Kari Kuulasmaa

Bibliographic record

VenueEpidemiologic Perspectives & Innovations · 2007
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGenetic Associations and Epidemiology
Canadian institutionsnot available
FundersAcademy of FinlandInstitut National de la Santé et de la Recherche MédicaleSocialstyrelsenInstitute Pasteur De LilleUniversità degli Studi dell'InsubriaQueen's UniversityEuropean CommissionUniversità degli Studi di MilanoNational Research CentreUniversity of DundeeRoyal College of Surgeons in IrelandHelsingin Yliopisto
KeywordsCohortComputer scienceMedicineCohort studyEvent (particle physics)Data scienceStatisticsOperations managementEngineeringMathematicsPathology

Abstract

fetched live from OpenAlex

When carefully planned and analysed, the case-cohort design is a powerful choice for follow-up studies with multiple event types of interest. While the literature is rich with analysis methods for case-cohort data, little is written about the designing of a case-cohort study. Our experiences in designing, coordinating and analysing the MORGAM case-cohort study are potentially useful for other studies with similar characteristics. The motivation for using the case-cohort design in the MORGAM genetic study is discussed and issues relevant to its planning and analysis are studied. We propose solutions for appending the earlier case-cohort selection after an extension of the follow-up period and for achieving maximum overlap between earlier designs and the case-cohort design. Approaches for statistical analysis are studied in a simulation example based on the MORGAM data.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.200
metaresearch head score (Gemma)0.203
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesMetaresearch
Consensus categoriesMetaresearch
DomainCandidate signal: Methods · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Methods · Consensus signal: none
Teacher disagreement score0.800
Threshold uncertainty score0.986

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.2000.203
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0010.002
Science and technology studies0.0040.005
Scholarly communication0.0040.003
Open science0.0040.008
Research integrity0.0030.004
Insufficient payload (model declined to judge)0.0080.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.057
GPT teacher head0.360
Teacher spread0.304 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; the direct Gemma label and the distilled Codex classifier agree on what is shown here.

Study designObservational
DomainMethods
GenreMethods

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations131
Published2007
Admission routes1
Has abstractyes

Explore more

Same venueEpidemiologic Perspectives & InnovationsSame topicGenetic Associations and EpidemiologyFrench-language works237,207