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Record W2035454589 · doi:10.1073/pnas.0811273106

Functional and genetic evidence that the Mal/TIRAP allele variant 180L has been selected by providing protection against septic shock

2009· article· en· W2035454589 on OpenAlexaff
Bart Ferwerda, Santos Alonso, Kathy Banahan, Matthew B. B. McCall, Evangelos J. Giamarellos‐Bourboulis, Bart Ramakers, Maria Mouktaroudi, Pamela R. Fain, Neskuts Izagirre, Din Syafruddin, Tudor Cristea, Frank P. Mockenhaupt, Marita Troye‐Blomberg, Oliver Kumpf, Boubacar Maïga, Amagana Dolo, Ogobara K. Doumbo, Santhosh Sundaresan, George Bedu‐Addo, Reinout van Crevel, Lutz Hamann, Djin‐Ye Oh, Ralf R. Schumann, Leo A. B. Joosten, Concepción de la Rúa Vaca, Robert W. Sauerwein, Joost P.H. Drenth, Bart Jan Kullberg, André van der Ven, Adrian V. S. Hill, Peter Pickkers, Jos W.M. van der Meer, Luke O'neill, Mihai G. Netea

Bibliographic record

VenueProceedings of the National Academy of Sciences · 2009
Typearticle
Languageen
FieldImmunology and Microbiology
TopicImmune Response and Inflammation
Canadian institutionsInstitute of Infection and Immunity
FundersEuropean Social FundNederlandse Organisatie voor Wetenschappelijk OnderzoekEusko JaurlaritzaEuskal Herriko UnibertsitateaScience Foundation IrelandUniversity of Oxford
KeywordsBiologyImmunologyInnate immune systemAlleleTLR2TLR9TLR4Proinflammatory cytokineSepsisGeneticsImmune systemGeneInflammation

Abstract

fetched live from OpenAlex

Adequate responses by our innate immune system toward invading pathogens were of vital importance for surviving infections, especially before the antibiotic era. Recently, a polymorphism in Mal (Ser180Leu, TIRAP rs8177374), an important adaptor protein downstream of the Toll-like receptor (TLR) 2 and 4 pathways, has been described to provide protection against a broad range of infectious pathogens. We assessed the functional effects of this polymorphism in human experimental endotoxemia, and we demonstrate that individuals bearing the TIRAP 180L allele display an increased, innate immune response to TLR4 and TLR2 ligands, but not to TLR9 stimulation. This phenotype has been related to an increased resistance to infection. However, an overshoot in the release of proinflammatory cytokines by TIRAP 180L homozygous individuals suggests a scenario of balanced evolution. We have also investigated the worldwide distribution of the Ser180Leu polymorphism in 14 populations around the globe to correlate the genetic makeup of TIRAP with the local infectious pressures. Based on the immunological, clinical, and genetic data, we propose that this mutation might have been selected in West Eurasia during the early settlement of this region after the out-of-Africa migration of modern Homo sapiens. This combination of functional and genetic data provides unique insights to our understanding of the pathogenesis of sepsis.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.001
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.179
Threshold uncertainty score0.513

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0010.001
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.052
GPT teacher head0.258
Teacher spread0.206 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations90
Published2009
Admission routes1
Has abstractyes

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