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Fine‐scale biogeographical and temporal diversification processes of peacock swallowtails (<i>Papilio</i> subgenus <i>Achillides</i>) in the Indo‐Australian Archipelago

2012· article· en· W2045904572 on OpenAlexaff
Fabien L. Condamine, Emmanuel F. A. Toussaint, Adam M. Cotton, Gwenaëlle Genson, Felix A. H. Sperling, Gaël J. Kergoat

Bibliographic record

VenueCladistics · 2012
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicLepidoptera: Biology and Taxonomy
Canadian institutionsUniversity of Alberta
Fundersnot available
KeywordsVicarianceSubgenusArchipelagoSubspeciesBiogeographyBiologyBiological dispersalEcologyBiodiversityTaxonomy (biology)PhylogeneticsZoologyPhylogeography

Abstract

fetched live from OpenAlex

© The Willi Hennig Society 2012. ABSTRACT: Explanations for the high species diversity of the Indo-Australian Archipelago are often challenged by the region's complex climatic and geological histories. Here, we investigated the evolutionary history of swallowtail butterflies of the Papilio subgenus Achillides, comprising up to 25 recognized species and about 100 subspecies distributed across the Indo-Australian Archipelago. To estimate the relative contributions of factors influencing their biodiversity, we used DNA sequences to infer the phylogeny and species limits of 22 species including most of their subspecies. We recovered a highly resolved and well-supported phylogeny for the subgenus, and clarified some taxonomic ambiguities at the species level. The corresponding DNA-based species phylogeny was then employed to reconstruct their historical biogeography using relaxed-clock and parametric-based analyses. Molecular dating and biogeographical analyses showed that Achillides originated around 19 Ma in Sunda + Wallacea. Biogeographical reconstructions indicated that geological vicariance shaped the early evolutionary history of Achillides whereas dispersal influenced late diversification. Birth-death likelihood analyses allowed exploration of their tempo and mode of diversification. We detected several shifts in diversification rates that are attributable to past climate-induced biogeographical events. By assessing both regional and fine-scale biodiversity patterns, this study brings new findings to a biogeographical understanding of the Indo-Australian Archipelago.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.007
Threshold uncertainty score0.015

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.017
GPT teacher head0.238
Teacher spread0.220 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations53
Published2012
Admission routes1
Has abstractyes

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