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Record W2051387878 · doi:10.1128/jb.01252-12

Training the Biofilm Generation—a Tribute to J. W. Costerton

2012· article· en· W2051387878 on OpenAlexaff
Robert McLean, Joseph S. Lam, Lori L. Graham

Bibliographic record

VenueJournal of Bacteriology · 2012
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicBacterial biofilms and quorum sensing
Canadian institutionsSt. Francis Xavier UniversityUniversity of Guelph
Fundersnot available
KeywordsBiologyTributeBiofilmMicrobiologyComputational biologyBacteriaGeneticsArt history

Abstract

fetched live from OpenAlex

Although bacterial growth on surfaces was described by earlymicrobiologists, including Claude ZoBell (61), the term “bio-film ” (38) and the importance of adherent bacteria in nature and disease did not gain full prominence in the scientific community until the work of J. W. (Bill) Costerton’s group and the numerous laboratories that he collaborated with (11, 13, 16). During his lifetime (31), Bill’s boundless energy enabled him to push the concept of biofilms as a key to understanding how bacteria inter-act with the environment, be it rock surfaces, heat exchangers, medical devices, or human tissues. Bill was a highly effective com-municator through his prolific writing (more than 600 peer-re-viewed publications) and also through his public speaking, which conveyed exciting scientific concepts to audiences ranging from scientists to medical doctors, engineers, the U.S. Senate, and even the general public. For the past 2 decades, there have been numer-ous biofilm conferences, including the ones sponsored by the American Society for Microbiology (ASM), European and Asian microbiology societies, and biofilm research institutions and cen-ters around the world. Full validation that research on biofilms must be done was when the U.S. National Institutes of Health publicly announced, “Biofilms are medically important, account-ing for over 80 % of microbial infections in the body ” (program

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.600
Threshold uncertainty score0.293

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.037
GPT teacher head0.274
Teacher spread0.237 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations41
Published2012
Admission routes1
Has abstractyes

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