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Record W2052088008 · doi:10.2135/cropsci2004.0345

Geographic Patterns of RAPD Variation in Cultivated Flax

2005· article· en· W2052088008 on OpenAlexaff
Yong‐Bi Fu

Bibliographic record

VenueCrop Science · 2005
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicSoybean genetics and cultivation
Canadian institutionsAgriculture and Agri-Food Canada
Fundersnot available
KeywordsRAPDGermplasmBiologyLinumDomesticationIndian subcontinentGenetic diversityIntraspecific competitionGenetic variationBotanyPopulationGeneticsEcologyGene

Abstract

fetched live from OpenAlex

Geographic studies of plant molecular diversity can provide insights into plant domestication and enhance plant germplasm management and utilization, but such studies are lacking in cultivated flax ( Linum usitatissimum L.). The objective of this study was to assess the geographic patterns of flax variability in a world collection of cultivated flax by random amplified polymorphic DNA (RAPD) markers. Sixteen RAPD primers were applied to screen 2727 flax accessions representing 63 countries and one group of unknown origin, and 149 RAPD bands were scored for each accession. Analyses of the RAPD data revealed a wide range of occurrence frequencies of polymorphic bands from 0.0004 to 0.9978 with an average of 0.537. The majority (84.2%) of the RAPD variation resided within accessions of each country and only 15.8% of the variation was present among accessions of different countries. Grouping the accessions into 12 major regions explained 8.2% of the RAPD variation. Accessions from the East Asia and European regions were most diverse, but accessions from the regions of Indian Subcontinent and Africa were most distinct. Accessions from the West Asia region were genetically more related to those from the Africa region and less to those from the Indian Subcontinent region. These findings are significant for understanding flax domestication and also are useful in classifying intraspecific diversity of cultivated flax, establishing a core subset of the flax collection, and exploring new sources of genes for flax improvement.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.002

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0020.002
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.016
GPT teacher head0.225
Teacher spread0.209 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations61
Published2005
Admission routes1
Has abstractyes

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