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Record W2053730391 · doi:10.1016/j.bbmt.2005.11.366

A comparison of molecular prognostic tests in multiple myeloma

2006· article· en· W2053730391 on OpenAlexaff
J. van den Berghe, Jennifer Fesser, HU Wan-da, V. Michael

Bibliographic record

VenueBiology of Blood and Marrow Transplantation · 2006
Typearticle
Languageen
FieldMedicine
TopicMultiple Myeloma Research and Treatments
Canadian institutionsSaskatchewan Cancer AgencyUniversity of Saskatchewan
Fundersnot available
KeywordsMedicineMultiple myelomaStage (stratigraphy)KaryotypeFluorescence in situ hybridizationInternal medicineOncologyBone marrowTransplantationSurvival analysisPathologyGastroenterologyChromosomeBiologyGeneticsGene

Abstract

fetched live from OpenAlex

Triaging multiple myeloma patients for stem cell transplantation relies heavily on the identification of high-risk prognostic factors. Although a variety of molecular cytogenetic methods are widely utilized, it is not clear which, if any, has a greater value than others. In addition, identification of the best test(s) would assist in conserving valuable resources, especially at smaller centers. We conducted a comparative study on the bone marrow aspirates of 74 consecutive patients with Salmon-Durie Stage I, II, or III disease. The majority (59/74) of patients were clinically in advanced stage and planned to undergo therapy. On each patient, image analysis of morphologically selected interphase plasmacytes was utilized to ascertain the DNA ploidy level and karyotype analysis was attempted on metaphases obtained following cell culture. Fluorescence in situ hybridization (FISH) for RB1 and TP53 was performed in all cases with >30% bone marrow plasmacytes. Neither the detection of hypodiploidy or hyperdiploidy by image analysis or the deletion of TP53 by FISH correlated with survival (P = .871 and P = .792, respectively). Deletion of the RB1 locus was observed in 27% of patients tested and tended to significance (P = .270). A karyotype was achieved in 43% of patients. An abnormal karyotype was observed only in Stage III patients and was significantly linked to poor survival by Kaplan-Meier analysis (P = .002). Evaluating a small cohort with a short observation period and using the endpoint of death, highlights those tests most linked to advanced stage disease and identifies those patients most likely to benefit from stem cell transplantation. A cost-effective algorithm is suggested in which cytogenetic analysis is performed only on Stage III patients and FISH for a 13q14 locus alone is performed in those with >30% bone marrow plasmacytes.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.004
metaresearch head score (Gemma)0.010
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.004
Threshold uncertainty score0.019

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0040.010
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0020.001
Science and technology studies0.0000.000
Scholarly communication0.0010.001
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.022
GPT teacher head0.311
Teacher spread0.289 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2006
Admission routes1
Has abstractyes

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