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Record W2054302851 · doi:10.4141/p06-156

Probability of a recombinant inbred diploid plant for two linked genes

2007· article· en· W2054302851 on OpenAlexvenueno aff
T. C. Helms

Bibliographic record

VenueCanadian Journal of Plant Science · 2007
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicGenetics and Plant Breeding
Canadian institutionsnot available
Fundersnot available
KeywordsInbreedingBiologyGeneticsGenotypeLinkage (software)TraitPopulationInbred strainGenetic linkageQuantitative trait locusSelection (genetic algorithm)PloidyGeneDemographyComputer science

Abstract

fetched live from OpenAlex

For some discreet traits, breeders may need to break genetic linkage between a desirable trait and an undesirable trait. Breeders need to be able to determine the minimum number of plants to grow to have a specified probability of identifying at least one plant that is recombinant between two linked loci. Since 1931, recurrence equations have been available to determine the genotypic frequencies of each genotype when two loci are linked as the level of inbreeding changes. However, these genotypic frequencies have not been published in a tabular form that would be helpful to the applied plant breeder. The objectives are to: (1) provide genotypic proportions as the intensity of linkage and the level of inbreeding increases; (2) determine the most efficient method of identifying a homozygous recombinant genotype as the level of inbreeding and linkage intensity are varied. Numerical examples and formula are provided to determine the number of plants that must be grown to have a given probability of success of identifying a specified number of recombinant types. For close linkage, the number of plants that must be genotyped is greatly decreased by waiting until the population is highly inbred. Key words: Genetic recombination, inbreeding

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.002
metaresearch head score (Gemma)0.009
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Theoretical or conceptual · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.006
Threshold uncertainty score0.019

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0020.009
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.000
Science and technology studies0.0000.001
Scholarly communication0.0010.001
Open science0.0010.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0060.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.065
GPT teacher head0.226
Teacher spread0.162 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designTheoretical or conceptual
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2007
Admission routes1
Has abstractyes

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