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Record W2060283154 · doi:10.1021/jp8082858

Effect of Time on the Rate of Long Range Polymer Segmental Intramolecular Encounters

2009· article· en· W2060283154 on OpenAlexaff
Mark Ingratta, Jean Duhamel

Bibliographic record

VenueThe Journal of Physical Chemistry B · 2009
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicProtein Structure and Dynamics
Canadian institutionsUniversity of Waterloo
Fundersnot available
KeywordsPyreneExcited statePolymerChemistryKineticsMonomerReaction rate constantFluorescenceScalingPolystyreneAnalytical Chemistry (journal)Intramolecular forceCrystallographyStereochemistryPhysicsAtomic physicsOrganic chemistryOptics

Abstract

fetched live from OpenAlex

The kinetics of encounters between the pyrene pendants randomly attached along a polystyrene chain (Py-PS) were monitored with a fluorescence blob model (FBM) as an external quencher was added to the solution to decrease the lifetime of the excited pyrene. The fluorescence decays acquired with the Py-PS samples yielded a measure of the volume Vblob probed by an excited pyrene during its lifetime in the form of N0blob, the number of monomers found within Vblob, and K0blob, which is inversely proportional to Vblob. Both N0blob and K0blob(-1) were found to increase with increasing probing time as the excited pyrene was allowed to probe a larger Vblob volume. The rate constant for pyrene-pyrene encounters was obtained from the product (KblobNblob). (KblobNblob) was found to decrease with increasing probing time, in agreement with scaling arguments suggesting that, as the probing time increases, the exited pyrene probes a larger Vblob where the local concentration of ground-state pyrenes in the polymer coil, [Py]loc, is smaller. K0blob, which is inversely proportional to Vblob, was found to scale as N0blob(alpha), where alpha equaled -1.5 and -1.2 in DMF and THF, respectively. The alpha exponents found for the Py-PS samples are in the same range as those found for other polymers exhibiting a random polymer coil conformation in solution and where much smaller than those obtained with more compact structured alpha-helical polypeptides randomly labeled with pyrene. Master curves were also constructed that describe how K0blob and the product (KblobNblob) scale as a function of solvent viscosity, probing time, and N0blob. These scaling laws illustrate the opposite effects that probing time and viscosity have on N0blob, V0blob, and the product (KblobNblob).

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.005
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.003
Threshold uncertainty score0.011

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.005
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0010.001
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0030.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.002
GPT teacher head0.214
Teacher spread0.212 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations14
Published2009
Admission routes1
Has abstractyes

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