Mitochondrial DNA variation in water shrews (<i>Sorex</i><i>palustris</i>,<i>Sorex</i><i>bendirii</i>) from western North America: implications for taxonomy and phylogeography
Bibliographic record
Abstract
Inter- and intra-specific variations in cytochrome b (Cytb) sequence were assessed in 22 specimens of Sorex palustris Richardson, 1828 and 6 specimens of Sorex bendirii (Merriam, 1884) from 20 locations in western North America. Phylogenetic analyses revealed three distinct clades: Boreal (S. p. palustris), Cordilleran (S. p. brooksi, S. p. navigator), and Coastal (S. b. palmeri, S. b. bendirii). Sequence divergence between the Boreal and the Coastal–Cordilleran lineages was 6.9%, while the divergence between the Coastal and the Cordilleran clades was 3.1%. Sorex palustris brooksi, a subspecies endemic to Vancouver Island, showed minor divergence from mainland samples of S. p. navigator. The results suggest that S. palustris may consist of two species: a boreal eastern form (S. palustris) and a Cordilleran form (S. navigator). The taxonomic validity of S. p. brooksi is unresolved. Distribution of the three clades are consistent with vicariance and isolation in coastal, Cordilleran, and eastern refugia in the Late Pliocene or Pleistocene. The Vancouver Island subspecies S. p. brooksi is probably derived from postglacial colonization in the Late Pleistocene.
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How this classification was reachedexpand
Full frame machine prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.
Distilled classifier scores by category (both heads)
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.000 | 0.000 |
| Meta-epidemiology (narrow) | 0.000 | 0.000 |
| Meta-epidemiology (broad) | 0.000 | 0.000 |
| Bibliometrics | 0.001 | 0.000 |
| Science and technology studies | 0.000 | 0.000 |
| Scholarly communication | 0.000 | 0.000 |
| Open science | 0.000 | 0.000 |
| Research integrity | 0.000 | 0.000 |
| Insufficient payload (model declined to judge) | 0.001 | 0.000 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".