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Record W2062689300 · doi:10.1186/1897-4287-9-s1-p38

Late presentation of cancer in compound heterozygote PMS2 mutation carrier

2011· article· en· W2062689300 on OpenAlexaff
Paulien P van Galen, Renée Perrier, François P. Bernier

Bibliographic record

VenueHereditary Cancer in Clinical Practice · 2011
Typearticle
Languageen
FieldMedicine
TopicGenetic factors in colorectal cancer
Canadian institutionsAlberta Children's Hospital
Fundersnot available
KeywordsMedicineHeterozygote advantageHuman geneticsPresentation (obstetrics)PMS2CancerMutationGeneticsBioinformaticsInternal medicineSurgeryGeneGenotypeBiology

Abstract

fetched live from OpenAlex

Turcot syndrome is clinically characterized by the occurrence of primary brain tumors, colorectal cancer and/or accompanying adenomas. It has been described as both an autosomal dominant and recessive condition and mutations in APC, MLH1, MSH2, MSH6 and PMS2 have been reported. Constitutional Mismatch repair (CMMR) deficiency is a variant of Lynch syndrome (LS) associated with biallelic MMR mutations. Individuals present with NF1 manifestations and generally develop hematological malignancies, brain tumors and/or LS associated cancers, in the first or second decade of life. We report an individual with café au lait macules (CAL) and a history of glioblastoma at 31 and proximal colon cancer at 32. Family history includes a mother with hematologic cancers in her 60’s, maternal half uncle with colon cancer at 48, maternal half uncle with renal cancer and three maternal great uncles with colon cancer. The proband underwent a standard clinical assessment in the cancer genetics clinic. Immunohistochemistry (IHC) and genetic testing for MLH1, MSH2, MSH6 and PMS2 was completed followed by microsatellite (MSI) studies and imunohistochemistry (IHC) for PMS2. IHC on tissue from the patient’s colorectal tumor showed very weak staining of MLH1 in both the tumor and benign colonic mucosa and lymphocytes. No mutation was detected by sequencing and MLPA for MLH1, MSH2 and MSH6. MSI was high and subsequent IHC for PMS2 showed absent staining. Sequencing of PMS2 identified two changes: 2019 delT resulting in a frameshift mutation at codon 673 and 2249G>A (G750D), a missense change in a fully conserved region. In-silico analysis by SIFT [ http://sift.jcvi.org/ ] and Polyphen [ http://genetics.bwh.harvard.edu/pph/ ] predict the missense change to be damaging. This change has also been previously reported as a biallelic mutation in individual with a complete PMS2 gene deletion and history of rectal cancer and brain tumor at 22 and 23 respectively [ 1 ]. The proband’s mother is currently being tested to confirm the two PMS2 mutations are in trans. We report an individual with Turcot syndrome and biallelic PMS2 mutations who developed her first cancer in her 30’s. In this case, biallelic mutations were suspected due to the history of CALs. This result is in keeping with recent reports suggesting a milder phenotype may exist in individuals with biallelic PMS2 mutations, particularly in those where one mutation may be hypomorphic resulting in some residual MMR proficiency.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.002
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesInsufficient payload (model declined to judge)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.070
Threshold uncertainty score0.999

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.002
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0020.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.123
GPT teacher head0.453
Teacher spread0.331 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations2
Published2011
Admission routes1
Has abstractyes

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