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Record W2063408296 · doi:10.1371/journal.pone.0109973

MicroRNA Related Polymorphisms and Breast Cancer Risk

2014· article· en· W2063408296 on OpenAlex

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

affAt least one author lists a Canadian institution in the pinned OpenAlex snapshot.
fundA Canadian funder is recorded on the work.

Bibliographic record

VenuePLoS ONE · 2014
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicMicroRNA in disease regulation
Canadian institutionsUniversité de MontréalMcGill UniversityMcGill University Health CentreRoyal Victoria Regional Health CentreUniversité LavalRoyal Victoria HospitalCentre hospitalier universitaire de QuébecSt. Michael's HospitalMount Sinai HospitalLunenfeld-Tanenbaum Research InstitutePublic Health OntarioUniversity of Toronto
FundersMedical Research and Materiel CommandNational Cancer InstituteUniversitätsklinikum Hamburg-EppendorfCancer Council TasmaniaMedical Research CouncilU.S. ArmyNational Institutes of HealthRheinische Friedrich-Wilhelms-Universität BonnMinistero dello Sviluppo EconomicoAgence Nationale de Sécurité Sanitaire de l’Alimentation, de l’Environnement et du TravailAgence Française de Sécurité Sanitaire de l'Environnement et du TravailNational Health and Medical Research CouncilOulun YliopistoDeutsche KrebshilfeMedizinischen Hochschule HannoverNorges ForskningsrådInstitut National Du CancerLeids Universitair Medisch CentrumVetenskapsrådetStockholms Läns LandstingKuopion Yliopistollinen SairaalaCanadian Institutes of Health ResearchGeneral Secretariat for Research and TechnologyBundesministerium für Bildung und ForschungMinisterio de Economía y CompetitividadDeutsche Gesetzliche UnfallversicherungNederlandse Organisatie voor Wetenschappelijk OnderzoekErasmus Medisch CentrumFonds Wetenschappelijk OnderzoekCancerfondenKarolinska InstitutetUniversity of CambridgeZonMwRobert Bosch StiftungNational Breast Cancer FoundationEuropean CommissionAcademy of FinlandKing's College LondonMcGill UniversityBreast Cancer Research FoundationKWF KankerbestrijdingHerlev HospitalFondation du cancer du sein du QuébecWellcome TrustCancer Research UKRoswell Park Cancer InstituteNational Institute for Health and Care ResearchAssociazione Italiana per la Ricerca sul CancroItä-Suomen YliopistoMinistère du Développement Économique, de l’Innovation et de l’ExportationLon V. Smith FoundationEuropean Social FundAgency for Science, Technology and ResearchMcGill University Health CentreDavid F. and Margaret T. Grohne Family FoundationLigue Contre le CancerDeutsches KrebsforschungszentrumHelsingin ja Uudenmaan SairaanhoitopiiriNIHR Biomedical Research Centre, Royal Marsden NHS Foundation Trust/Institute of Cancer ResearchFondation de FranceCancer Council VictoriaCalifornia Department of Public HealthSundhed og Sygdom, Det Frie ForskningsrådU.S. Department of Health and Human ServicesInstituto de Salud Carlos IIIOhio State UniversityCancer Care OntarioSusan G. Komen for the Cure
KeywordsSingle-nucleotide polymorphismBreast cancerDroshaGenome-wide association studyOdds ratiomicroRNACase-control studyOncologyBiologyEstrogen receptorCancerBioinformaticsMedicineInternal medicineGeneticsGenotypeGene

Abstract

fetched live from OpenAlex

Genetic variations, such as single nucleotide polymorphisms (SNPs) in microRNAs (miRNA) or in the miRNA binding sites may affect the miRNA dependent gene expression regulation, which has been implicated in various cancers, including breast cancer, and may alter individual susceptibility to cancer. We investigated associations between miRNA related SNPs and breast cancer risk. First we evaluated 2,196 SNPs in a case-control study combining nine genome wide association studies (GWAS). Second, we further investigated 42 SNPs with suggestive evidence for association using 41,785 cases and 41,880 controls from 41 studies included in the Breast Cancer Association Consortium (BCAC). Combining the GWAS and BCAC data within a meta-analysis, we estimated main effects on breast cancer risk as well as risks for estrogen receptor (ER) and age defined subgroups. Five miRNA binding site SNPs associated significantly with breast cancer risk: rs1045494 (odds ratio (OR) 0.92; 95% confidence interval (CI): 0.88-0.96), rs1052532 (OR 0.97; 95% CI: 0.95-0.99), rs10719 (OR 0.97; 95% CI: 0.94-0.99), rs4687554 (OR 0.97; 95% CI: 0.95-0.99, and rs3134615 (OR 1.03; 95% CI: 1.01-1.05) located in the 3' UTR of CASP8, HDDC3, DROSHA, MUSTN1, and MYCL1, respectively. DROSHA belongs to miRNA machinery genes and has a central role in initial miRNA processing. The remaining genes are involved in different molecular functions, including apoptosis and gene expression regulation. Further studies are warranted to elucidate whether the miRNA binding site SNPs are the causative variants for the observed risk effects.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.267
Threshold uncertainty score0.360

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.008
GPT teacher head0.201
Teacher spread0.193 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it