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A practical protocol for particle bombardment-mediated transformation of Phyllostachys bamboo suspension cells

2011· article· en· W2070807388 on OpenAlexfundno aff
Shinjiro Ogita, Nanaka Kikuchi, Taiji Nomura, Yasuo Kato

Bibliographic record

VenuePlant Biotechnology · 2011
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicPlant tissue culture and regeneration
Canadian institutionsnot available
FundersUniversity of ToyamaUniversity of Calgary
KeywordsBamboomCherryBiologyPhyllostachysTransformation (genetics)PicloramSuspension (topology)Molecular biologyCell biologyBotanyGeneGreen fluorescent proteinBiochemistry

Abstract

fetched live from OpenAlex

We developed a particle bombardment-mediated transformation protocol in Phyllostachys bamboo by optimizing the growth efficiency of a target cell culture system. Under the optimal condition, i.e. Murashige and Skoog medium containing 680 mg l−1 KH2PO4 and 10 μM Picloram, bamboo suspension cells actively proliferated at ca. 80 ml sedimented cell volume per 100 ml medium in 2 weeks. Log phased cells, i.e. 8 to 13-day-old suspension cells, which showed synchronous cell divisions with uniform morphology, were selected for the bombardment. We found that a target distance, 6 cm was much better for the transient gene expression (222 GUS-positive cells/dish/shot in average) than that of 9 cm (38 GUS-positive cells/dish/shot in average) in the target cells. When the bombardment was carried out using lag phased cells, e.g. 5-d-old cells, no or less GUS-positive cells could be seen. A high generation of stable transgenic bamboo cells was achieved with constructs expressing hygromycin phosphotransferase gene and enhanced fluorescent protein genes namely AcGFP1 and mCherry.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.176
Threshold uncertainty score0.338

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.043
GPT teacher head0.286
Teacher spread0.242 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations40
Published2011
Admission routes1
Has abstractyes

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