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Record W2071708194 · doi:10.1186/1742-4690-6-s3-p259

P16-30. Induction of Tim-3 expression by the common gamma-chain cytokines IL-2, IL-7, IL-15 and IL-21

2009· article· en· W2071708194 on OpenAlexaff
B.R. Jones, MA Ostrowski, CA Lo, Shariq Mujib, DV Hunter, Lishomwa C. Ndhlovu, Douglas F. Nixon

Bibliographic record

VenueRetrovirology · 2009
Typearticle
Languageen
FieldImmunology and Microbiology
TopicGalectins and Cancer Biology
Canadian institutionsUniversity of Toronto
Fundersnot available
KeywordsMedicineInterleukin 4ImmunologyComputational biologyCytokineBiology

Abstract

fetched live from OpenAlex

Tim-3 expression is upregulated in HIV-1-infected individuals, and has been implicated in driving T cell exhaustion. While expression is disproportionately high on HIV-1-specific CD8+ T cells, >70% of total CD8+ T cells in the peripheral blood of infected individuals have been observed to express Tim-3, suggesting the existence of a more general mechanism of induction. Thus, Tim-3 may contribute not only to an impairement of virus-specific responses, but also tp a more generalized immunosuppression. The mechanisms leading to this global upregulation of Tim-3 expression remain unknown. Isolated CD4+ T cells were infected with HIV-1 in vitro. Whole PBMC, and isolated CD4+ or CD8+ T cells were treated with stimuli including LPS, and cytokines. Tim-3 expression was analyzed at various time-points by flow cytometry, in conjunction with a number of phenotypic markers and CFSE. Upon removal of cytokine, apoptosis (annexin-V) was analyzed along with Tim-3 expression. In vitro HIV-1-infection had no effect on the Tim-3 expression levels of CD4+ T cells. The common gamma-chain cytokines induced high levels of Tim-3 expression with IL-15>IL-2>IL-21>IL-7, while LPS and IL-4 had no effect. The gamma-chain cytokines induced distinct profiles of Tim-3/PD-1 co-expression with some driving a dual-positive population, and other preferentially upregulating either Tim-3 or PD-1. Tim-3 expression was primarily limited to cells that had undergone proliferation in response to cytokine, and these cells preferentially underwent apoptosis upon cytokine removal. We provide evidence against the direct exposure of T cells to virus, or exposure to LPS as etiologies for global Tim-3 upregulation in HIV-1 infected individuals. Potent upregulation of Tim-3 is however driven by exposure of T cells to common-gamma chain cytokines. Physiologically, this upregulation likely serves to balance the survival signals provided by these cytokines, and to drive the elimination of these activated cells upon removal of cytokine (resolution of infection).

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.408
Threshold uncertainty score0.825

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0000.000
Science and technology studies0.0000.001
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.009
GPT teacher head0.231
Teacher spread0.222 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2009
Admission routes1
Has abstractyes

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