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Record W2072533743 · doi:10.2135/cropsci2013.06.0391

Genetic Study and QTL Mapping of Seed Glucosinolate Content in <i>Brassica rapa</i> L.

2014· article· en· W2072533743 on OpenAlexafffund
Habibur Rahman, Berisso Kebede, Céline Zimmerli, Rong‐Cai Yang

Bibliographic record

VenueCrop Science · 2014
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGenomics, phytochemicals, and oxidative stress
Canadian institutionsUniversity of Alberta
FundersGenome AlbertaGenome Canada
KeywordsQuantitative trait locusBiologyBrassica rapaGeneticsGenetic variationInbred strainGlucosinolateOverdominancePopulationDominance (genetics)Genetic analysisAlleleBrassicaGeneBotany

Abstract

fetched live from OpenAlex

ABSTRACT Self‐incompatibility in Brassica rapa L. is a major impediment to experimental studies on the genetic control of quantitative traits such as seed glucosinolate (GSL) content. In this paper, we report quantitative trait loci (QTL) mapping of total seed GSL content using a recombinant inbred line (RIL) population derived from two self‐compatible high‐ and low‐GSL B. rapa grown under different environmental conditions. Furthermore, quantitative genetic analysis using the parents and their F 1 , F 2 , B 1 (F 1 backcrossed to high‐parent P 1 ), B 2 (F 1 backcrossed to low‐parent P 2 ), and self‐pollinated progenies of B 1 generation populations are also reported. Quantitative genetic analysis showed that additive genetic variance was consistently significant under different environments, while the dominance effect was significant under one growth condition. However, a simple additive‐dominance model was inadequate to explain the segregation variation among the generation means. Nonallelic interaction effects were important in the genetic control of GSL content in early generations where the levels of heterozygosity remained high. QTL mapping detected three loci at the linkage groups A2, A7, and A9 involved in the control of this trait. These QTL individually explained 5 to 22% of total phenotypic variation. The QTL on A9 was detected in all environments and explained 22%, the greatest amount of phenotypic variation. No additive × additive gene interaction was detected based on QTL analysis, and this also largely agreed with quantitative genetic analysis. Similarly, the number of loci detected based on QTL mapping also agree with the results obtained from quantitative genetic analysis.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.238
Threshold uncertainty score0.351

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.001
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.019
GPT teacher head0.240
Teacher spread0.221 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations16
Published2014
Admission routes2
Has abstractyes

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