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Record W2074666166 · doi:10.5344/ajev.2011.10112

<i>Cylindrocarpon</i>Species Associated with Black-Foot of Grapevine in Northeastern United States and Southeastern Canada

2011· article· en· W2074666166 on OpenAlexaboutno aff
Elsa Petit, Evelyne Barriault, Kendra Baumgartner, Wayne F. Wilcox, Philippe E. Rolshausen

Bibliographic record

VenueAmerican Journal of Enology and Viticulture · 2011
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicPlant Pathogens and Fungal Diseases
Canadian institutionsnot available
Fundersnot available
KeywordsVineBiologyInternal transcribed spacerTaxonomy (biology)Common speciesGeographyPhylogenetic treeEcologyBotanyHabitat

Abstract

fetched live from OpenAlex

Black-foot disease of grapevine is caused by a complex of soilborne fungi. The most common and virulent species, which are found across all major grapegrowing regions of the world, are <i>Cylindrocarpon liriodendri</i> (<i>C. liriodendri</i>) and <i>C. macrodidymum</i> (teleomorph = <i>Neonectria</i>). Other species with a more limited distribution and uncertainty regarding their pathogenicity include <i>C. destructans</i>, <i>C. obtusisporum</i>, <i>C. pauciseptatum</i>, <i>Campylocarpon fasciculare</i> (<i>C. fasciculare</i>), and <i>C. pseudofasciculare</i>. The goal was to identify the species associated with black-foot disease in vineyards of the northeastern United States (U.S.) and southeastern Canada as such regions have not previously been surveyed. Recent expansion of winegrape acreage in these regions necessitates a clear understanding of the disease risks. Eleven U.S. states and two Canadian provinces were surveyed. Genus-level identification was based preliminarily on colony morphology. Species-level identity was based on phylogenetic analysis of two nuclear loci, 5.8S rDNA and ß-tubulin, using voucher specimens and sequences with high sequence identity. We report for the first time from Canada recovery of <i>C. liriodendri</i>, <i>C. macrodidymum</i>, and <i>C. destructans</i> from symptomatic grapevines. Also reported are species not previously identified from black-foot symptomatic grapes anywhere in the world, including <i>C. didymum</i> and a <i>Neonectria mammoidea</i>-like species. Results suggest that local viticultural practices, primarily burying the vine underground during winter, may create injuries, and thus exacerbate infection by wound pathogens such as <i>Cylindrocarpon</i>. Overall this work improves the knowledge of black-foot disease in these nascent grapegrowing regions and will be helpful to growers in their decisions regarding viticultural practices, planting, and disease management.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.067
Threshold uncertainty score0.946

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.006
GPT teacher head0.178
Teacher spread0.171 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations40
Published2011
Admission routes1
Has abstractyes

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