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Record W2077701181 · doi:10.1038/ejhg.2012.96

Toward a roadmap in global biobanking for health

2012· article· en· W2077701181 on OpenAlexafffund
Jennifer R. Harris, Paul R. Burton, Bartha Maria Knoppers, Klaus Lindpaintner, Marianna J. Bledsoe, Anthony J. Brookes, Isabelle Budin‐Ljøsne, Rex L. Chisholm, David Cox, Mylène Deschênes, Isabel Fortier, Pierre Hainaut, Robert E. Hewitt, Jane Kaye, Jan‐Eric Litton, Andres Metspalu, Bill Ollier, Lyle J. Palmer, Aarno Palotie, Markus Pasterk, Markus Perola, Peter Riegman, Gert-Jan van Ommen, Martin Yuille, Kurt Zatloukal

Bibliographic record

VenueEuropean Journal of Human Genetics · 2012
Typearticle
Languageen
FieldMedicine
TopicEthics in Clinical Research
Canadian institutionsOntario Institute for Cancer ResearchLunenfeld-Tanenbaum Research InstituteMcGill University Health CentreMcGill University
FundersMedical Research CouncilTartu ÜlikoolNorges ForskningsrådEuropean CommissionNederlandse Organisatie voor Wetenschappelijk OnderzoekWellcome TrustVetenskapsrådetGenome Canada
KeywordsBiobankHarmonizationBusinessInteroperabilitySustainabilityHealth carePublic relationsPublic healthEngineering ethicsKnowledge managementPolitical scienceMedicineEngineeringComputer scienceLawBioinformatics

Abstract

fetched live from OpenAlex

Biobanks can have a pivotal role in elucidating disease etiology, translation, and advancing public health. However, meeting these challenges hinges on a critical shift in the way science is conducted and requires biobank harmonization. There is growing recognition that a common strategy is imperative to develop biobanking globally and effectively. To help guide this strategy, we articulate key principles, goals, and priorities underpinning a roadmap for global biobanking to accelerate health science, patient care, and public health. The need to manage and share very large amounts of data has driven innovations on many fronts. Although technological solutions are allowing biobanks to reach new levels of integration, increasingly powerful data-collection tools, analytical techniques, and the results they generate raise new ethical and legal issues and challenges, necessitating a reconsideration of previous policies, practices, and ethical norms. These manifold advances and the investments that support them are also fueling opportunities for biobanks to ultimately become integral parts of health-care systems in many countries. International harmonization to increase interoperability and sustainability are two strategic priorities for biobanking. Tackling these issues requires an environment favorably inclined toward scientific funding and equipped to address socio-ethical challenges. Cooperation and collaboration must extend beyond systems to enable the exchange of data and samples to strategic alliances between many organizations, including governmental bodies, funding agencies, public and private science enterprises, and other stakeholders, including patients. A common vision is required and we articulate the essential basis of such a vision herein.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.119
metaresearch head score (Gemma)0.075
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Theoretical or conceptual · Consensus signal: Theoretical or conceptual
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.119
Threshold uncertainty score0.628

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.1190.075
Meta-epidemiology (narrow)0.0030.002
Meta-epidemiology (broad)0.0020.004
Bibliometrics0.0050.006
Science and technology studies0.0090.023
Scholarly communication0.0330.060
Open science0.0080.038
Research integrity0.0290.031
Insufficient payload (model declined to judge)0.0280.015

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.577
GPT teacher head0.590
Teacher spread0.013 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designTheoretical or conceptual
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations172
Published2012
Admission routes2
Has abstractyes

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