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Record W2079048225 · doi:10.1139/v08-047

Targeted engineering of <i>Cupriavidus necator</i> chromosome for biosynthesis of poly(3-hydroxybutyrate-<i>co</i>-3-hydroxyhexanoate) from vegetable oil

2008· article· en· W2079048225 on OpenAlexfundvenueno aff
Jun Mifune, Satoshi Nakamura, Toshiaki Fukui

Bibliographic record

VenueCanadian Journal of Chemistry · 2008
Typearticle
Languageen
FieldMaterials Science
Topicbiodegradable polymer synthesis and properties
Canadian institutionsnot available
FundersStaatssekretariat für Bildung, Forschung und InnovationPublic Health Agency of Canada
KeywordsCupriavidus necatorChemistryPolyhydroxybutyrateOperonPolyhydroxyalkanoatesBiochemistryBiosynthesisMutantStrain (injury)EnzymeGeneBacteriaBiologyGenetics

Abstract

fetched live from OpenAlex

Previous studies have demonstrated that heterologous expression of PHA synthase from Aeromonas caviae (PhaC Ac ), capable of accepting (R)-3-hydroxyacyl-CoA of C 4 –C 7 as substrates, could confer the ability to PHA-negative mutant of Cupriavidus necator PHB - 4 to synthesize poly((R)-3-hydroxybutyrate-co-(R)-3-hydroxyhexanoate) [P(3HB-co-3HHx)] from vegetable oils. The mutation point within pha operon in PHB - 4 was determined to be a single nonsense mutation within the PHA synthase gene (phaC Cn ), suggesting the much lower β-ketothiolase and NADPH-dependent acetoacetyl-CoA reductase activities observed in this strain would be a polar effect of the mutation. For further efficient biosynthesis of P(3HB-co-3HHx) copolyester, C. necator wild strain H16 was engineered by homologous recombination targeting the chromosomal phaC Cn , and the PHA productivity was compared with previous PHB – 4-derived strain harboring phaC Ac on a multi-copy plasmid (PHB – 4/pJRDEE32d13). A strain H16C Ac , in which phaC Cn was substituted for phaC Ac on the chromosome, could produce P(3HB-co-3HHx) from soybean oil with high productivity, but the 3HHx fraction in the accumulated polymer was decreased. Meanwhile, H16ΔC/pJRDEE32d13, that lost region for the original synthase gene and expresses exochromosomal phaC Ac , grew and accumulated PHA with similar properties to the PHB – 4-derived strain. The results of enzyme assay suggested that low β-ketothiolase activity might be relevant for decrease of growth ability accompanied by increase of 3HHx composition when soybean oil was fed as a sole carbon source. Key words: poly(hydroxyalkanoates), poly(3-hydroxybutyrate-co-3-hydroxyhexanoate), PHA synthase, Cupriavidus necator, vegetable oil.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.036
Threshold uncertainty score0.914

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0010.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.014
GPT teacher head0.184
Teacher spread0.171 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations66
Published2008
Admission routes2
Has abstractyes

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