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Mineralization of p-nitrophenol by pentachlorophenol-degrading Sphingomonas spp.

2006· article· en· W2079479993 on OpenAlexafffund
Kam Tin Leung, Odile Tresse, Deena Errampalli, Hung Lee, J. T. Trevors

Bibliographic record

VenueFEMS Microbiology Letters · 2006
Typearticle
Languageen
FieldEnvironmental Science
TopicMicrobial bioremediation and biosurfactants
Canadian institutionsUniversity of Guelph
FundersNatural Sciences and Engineering Research Council of CanadaRégion Normandie
KeywordsPentachlorophenolNitrophenolChemistryMineralization (soil science)Nitrite4-NitrophenolSphingomonas paucimobilisBiodegradationSphingomonasNuclear chemistryFood scienceChromatographyEnvironmental chemistryBiochemistryBacteriaNitrogenBiologyOrganic chemistryCatalysis

Abstract

fetched live from OpenAlex

Pentachlorophenol-degrading Sphingomonas sp. UG30 and Sphingomonas chlorophenolica strains RA2 and ATCC 39723 can transform p-nitrophenol in either mineral salts-glutamate or mineral salts-glucose medium after an initial lag period. However, mineralization of p-nitrophenol by these bacterial strains was observed only in mineral salts-glucose medium. When p-nitrophenol was the sole nitrogen source in the growth medium, UG30 mineralized 32% of 140 mM [14C]p-nitrophenol which was 10% higher than the amount of [14C]p-nitrophenol mineralized in mineral salts-glucose medium. UG30 did not transform or mineralize p-nitrophenol (in a growth medium) in the absence of glucose or glutamate. All three strains released nitrite during p-nitrophenol degradation in mineral salts-glucose medium and mineral salts-glutamate medium. The transformation rate of p-nitrophenol by UG30 was dependent on the initial p-nitrophenol concentration, with the optimal rate being found at 310 μM of p-nitrophenol and inhibition observed at ≥1100 μM of p-nitrophenol. Pre-exposure of UG30 cells to p-nitrophenol eliminated the initial lag phase of p-nitrophenol transformation. However, pre-growth of UG30 cells on pentachlorophenol did not reduce the lag period for p-nitrophenol transformation. Both p-nitrophenol- and pentachlorophenol-induced UG30 cells degraded pentachlorophenol without any lag phase. Thin layer chromatographic analysis of the reaction mixture suggested 4-nitrocatechol was an intermediate of p-nitrophenol transformation by UG30.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.006
Threshold uncertainty score0.012

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.001
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.003
GPT teacher head0.172
Teacher spread0.169 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations62
Published2006
Admission routes2
Has abstractyes

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